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The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography

The effect of a mutation on the organism often depends on what other mutations are already present in its genome. Geneticists refer to such mutational interactions as epistasis. Pairwise epistatic effects have been recognized for over a century, and their evolutionary implications have received theo...

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Autores principales: Weinreich, Daniel M., Lan, Yinghong, Jaffe, Jacob, Heckendorn, Robert B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Springer US 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986866/
https://www.ncbi.nlm.nih.gov/pubmed/29904213
http://dx.doi.org/10.1007/s10955-018-1975-3
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author Weinreich, Daniel M.
Lan, Yinghong
Jaffe, Jacob
Heckendorn, Robert B.
author_facet Weinreich, Daniel M.
Lan, Yinghong
Jaffe, Jacob
Heckendorn, Robert B.
author_sort Weinreich, Daniel M.
collection PubMed
description The effect of a mutation on the organism often depends on what other mutations are already present in its genome. Geneticists refer to such mutational interactions as epistasis. Pairwise epistatic effects have been recognized for over a century, and their evolutionary implications have received theoretical attention for nearly as long. However, pairwise epistatic interactions themselves can vary with genomic background. This is called higher-order epistasis, and its consequences for evolution are much less well understood. Here, we assess the influence that higher-order epistasis has on the topography of 16 published, biological fitness landscapes. We find that on average, their effects on fitness landscape declines with order, and suggest that notable exceptions to this trend may deserve experimental scrutiny. We conclude by highlighting opportunities for further theoretical and experimental work dissecting the influence that epistasis of all orders has on fitness landscape topography and on the efficiency of evolution by natural selection. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10955-018-1975-3) contains supplementary material, which is available to authorized users.
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spelling pubmed-59868662018-06-12 The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography Weinreich, Daniel M. Lan, Yinghong Jaffe, Jacob Heckendorn, Robert B. J Stat Phys Article The effect of a mutation on the organism often depends on what other mutations are already present in its genome. Geneticists refer to such mutational interactions as epistasis. Pairwise epistatic effects have been recognized for over a century, and their evolutionary implications have received theoretical attention for nearly as long. However, pairwise epistatic interactions themselves can vary with genomic background. This is called higher-order epistasis, and its consequences for evolution are much less well understood. Here, we assess the influence that higher-order epistasis has on the topography of 16 published, biological fitness landscapes. We find that on average, their effects on fitness landscape declines with order, and suggest that notable exceptions to this trend may deserve experimental scrutiny. We conclude by highlighting opportunities for further theoretical and experimental work dissecting the influence that epistasis of all orders has on fitness landscape topography and on the efficiency of evolution by natural selection. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (10.1007/s10955-018-1975-3) contains supplementary material, which is available to authorized users. Springer US 2018-02-07 2018 /pmc/articles/PMC5986866/ /pubmed/29904213 http://dx.doi.org/10.1007/s10955-018-1975-3 Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.
spellingShingle Article
Weinreich, Daniel M.
Lan, Yinghong
Jaffe, Jacob
Heckendorn, Robert B.
The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography
title The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography
title_full The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography
title_fullStr The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography
title_full_unstemmed The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography
title_short The Influence of Higher-Order Epistasis on Biological Fitness Landscape Topography
title_sort influence of higher-order epistasis on biological fitness landscape topography
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5986866/
https://www.ncbi.nlm.nih.gov/pubmed/29904213
http://dx.doi.org/10.1007/s10955-018-1975-3
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