Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites

BACKGROUND: Targeted PCR amplicon sequencing (TAS) techniques provide a sensitive, scalable, and cost-effective way to query and identify closely related bacterial species and strains. Typically, this is accomplished by targeting housekeeping genes that provide resolution down to the family, genera,...

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Detalles Bibliográficos
Autores principales: Furstenau, Tara N., Cocking, Jill H., Sahl, Jason W., Fofanov, Viacheslav Y.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996513/
https://www.ncbi.nlm.nih.gov/pubmed/29890941
http://dx.doi.org/10.1186/s12859-018-2225-z

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996513/
https://www.ncbi.nlm.nih.gov/pubmed/29890941
http://dx.doi.org/10.1186/s12859-018-2225-z

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