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Variant site strain typer (VaST): efficient strain typing using a minimal number of variant genomic sites
BACKGROUND: Targeted PCR amplicon sequencing (TAS) techniques provide a sensitive, scalable, and cost-effective way to query and identify closely related bacterial species and strains. Typically, this is accomplished by targeting housekeeping genes that provide resolution down to the family, genera,...
Autores principales: | Furstenau, Tara N., Cocking, Jill H., Sahl, Jason W., Fofanov, Viacheslav Y. |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5996513/ https://www.ncbi.nlm.nih.gov/pubmed/29890941 http://dx.doi.org/10.1186/s12859-018-2225-z |
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