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Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein
We combine experimental and computational methods to address the anomalous kinetics of long-range electron transfer (ET) in mutants of Pseudomonas aeruginosa azurin. ET rates and driving forces for wild type (WT) and three N47X mutants (X = L, S, and D) of Ru(2,2′-bipyridine)(2) (imidazole)(His83) a...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6004490/ https://www.ncbi.nlm.nih.gov/pubmed/29844178 http://dx.doi.org/10.1073/pnas.1805719115 |
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author | Kretchmer, Joshua S. Boekelheide, Nicholas Warren, Jeffrey J. Winkler, Jay R. Gray, Harry B. Miller, Thomas F. |
author_facet | Kretchmer, Joshua S. Boekelheide, Nicholas Warren, Jeffrey J. Winkler, Jay R. Gray, Harry B. Miller, Thomas F. |
author_sort | Kretchmer, Joshua S. |
collection | PubMed |
description | We combine experimental and computational methods to address the anomalous kinetics of long-range electron transfer (ET) in mutants of Pseudomonas aeruginosa azurin. ET rates and driving forces for wild type (WT) and three N47X mutants (X = L, S, and D) of Ru(2,2′-bipyridine)(2) (imidazole)(His83) azurin are reported. An enhanced ET rate for the N47L mutant suggests either an increase of the donor–acceptor (DA) electronic coupling or a decrease in the reorganization energy for the reaction. The underlying atomistic features are investigated using a recently developed nonadiabatic molecular dynamics method to simulate ET in each of the azurin mutants, revealing unexpected aspects of DA electronic coupling. In particular, WT azurin and all studied mutants exhibit more DA compression during ET (>2 Å) than previously recognized. Moreover, it is found that DA compression involves an extended network of hydrogen bonds, the fluctuations of which gate the ET reaction, such that DA compression is facilitated by transiently rupturing hydrogen bonds. It is found that the N47L mutant intrinsically disrupts this hydrogen-bond network, enabling particularly facile DA compression. This work, which reveals the surprisingly fluctional nature of ET in azurin, suggests that hydrogen-bond networks can modulate the efficiency of long-range biological ET. |
format | Online Article Text |
id | pubmed-6004490 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-60044902018-06-18 Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein Kretchmer, Joshua S. Boekelheide, Nicholas Warren, Jeffrey J. Winkler, Jay R. Gray, Harry B. Miller, Thomas F. Proc Natl Acad Sci U S A Physical Sciences We combine experimental and computational methods to address the anomalous kinetics of long-range electron transfer (ET) in mutants of Pseudomonas aeruginosa azurin. ET rates and driving forces for wild type (WT) and three N47X mutants (X = L, S, and D) of Ru(2,2′-bipyridine)(2) (imidazole)(His83) azurin are reported. An enhanced ET rate for the N47L mutant suggests either an increase of the donor–acceptor (DA) electronic coupling or a decrease in the reorganization energy for the reaction. The underlying atomistic features are investigated using a recently developed nonadiabatic molecular dynamics method to simulate ET in each of the azurin mutants, revealing unexpected aspects of DA electronic coupling. In particular, WT azurin and all studied mutants exhibit more DA compression during ET (>2 Å) than previously recognized. Moreover, it is found that DA compression involves an extended network of hydrogen bonds, the fluctuations of which gate the ET reaction, such that DA compression is facilitated by transiently rupturing hydrogen bonds. It is found that the N47L mutant intrinsically disrupts this hydrogen-bond network, enabling particularly facile DA compression. This work, which reveals the surprisingly fluctional nature of ET in azurin, suggests that hydrogen-bond networks can modulate the efficiency of long-range biological ET. National Academy of Sciences 2018-06-12 2018-05-29 /pmc/articles/PMC6004490/ /pubmed/29844178 http://dx.doi.org/10.1073/pnas.1805719115 Text en Copyright © 2018 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Physical Sciences Kretchmer, Joshua S. Boekelheide, Nicholas Warren, Jeffrey J. Winkler, Jay R. Gray, Harry B. Miller, Thomas F. Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein |
title | Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein |
title_full | Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein |
title_fullStr | Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein |
title_full_unstemmed | Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein |
title_short | Fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein |
title_sort | fluctuating hydrogen-bond networks govern anomalous electron transfer kinetics in a blue copper protein |
topic | Physical Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6004490/ https://www.ncbi.nlm.nih.gov/pubmed/29844178 http://dx.doi.org/10.1073/pnas.1805719115 |
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