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Easy quantification of template-directed CRISPR/Cas9 editing
Template-directed CRISPR/Cas9 editing is a powerful tool for introducing subtle mutations in genomes. However, the success rate of incorporation of the desired mutations at the target site is difficult to predict and therefore must be empirically determined. Here, we adapted the widely used TIDE met...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007333/ https://www.ncbi.nlm.nih.gov/pubmed/29538768 http://dx.doi.org/10.1093/nar/gky164 |
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author | Brinkman, Eva K Kousholt, Arne N Harmsen, Tim Leemans, Christ Chen, Tao Jonkers, Jos van Steensel, Bas |
author_facet | Brinkman, Eva K Kousholt, Arne N Harmsen, Tim Leemans, Christ Chen, Tao Jonkers, Jos van Steensel, Bas |
author_sort | Brinkman, Eva K |
collection | PubMed |
description | Template-directed CRISPR/Cas9 editing is a powerful tool for introducing subtle mutations in genomes. However, the success rate of incorporation of the desired mutations at the target site is difficult to predict and therefore must be empirically determined. Here, we adapted the widely used TIDE method for quantification of templated editing events, including point mutations. The resulting TIDER method is a rapid, cheap and accessible tool for testing and optimization of template-directed genome editing strategies. A free web tool for TIDER data analysis is available at http://tide.nki.nl. |
format | Online Article Text |
id | pubmed-6007333 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-60073332018-06-25 Easy quantification of template-directed CRISPR/Cas9 editing Brinkman, Eva K Kousholt, Arne N Harmsen, Tim Leemans, Christ Chen, Tao Jonkers, Jos van Steensel, Bas Nucleic Acids Res Methods Online Template-directed CRISPR/Cas9 editing is a powerful tool for introducing subtle mutations in genomes. However, the success rate of incorporation of the desired mutations at the target site is difficult to predict and therefore must be empirically determined. Here, we adapted the widely used TIDE method for quantification of templated editing events, including point mutations. The resulting TIDER method is a rapid, cheap and accessible tool for testing and optimization of template-directed genome editing strategies. A free web tool for TIDER data analysis is available at http://tide.nki.nl. Oxford University Press 2018-06-01 2018-03-10 /pmc/articles/PMC6007333/ /pubmed/29538768 http://dx.doi.org/10.1093/nar/gky164 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Methods Online Brinkman, Eva K Kousholt, Arne N Harmsen, Tim Leemans, Christ Chen, Tao Jonkers, Jos van Steensel, Bas Easy quantification of template-directed CRISPR/Cas9 editing |
title | Easy quantification of template-directed CRISPR/Cas9 editing |
title_full | Easy quantification of template-directed CRISPR/Cas9 editing |
title_fullStr | Easy quantification of template-directed CRISPR/Cas9 editing |
title_full_unstemmed | Easy quantification of template-directed CRISPR/Cas9 editing |
title_short | Easy quantification of template-directed CRISPR/Cas9 editing |
title_sort | easy quantification of template-directed crispr/cas9 editing |
topic | Methods Online |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6007333/ https://www.ncbi.nlm.nih.gov/pubmed/29538768 http://dx.doi.org/10.1093/nar/gky164 |
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