HmmUFOtu: An HMM and phylogenetic placement based ultra-fast taxonomic assignment and OTU picking tool for microbiome amplicon sequencing studies

Culture-independent analysis of microbial communities frequently relies on amplification and sequencing of the prokaryotic 16S ribosomal RNA gene. Typical analysis pipelines group sequences into operational taxonomic units (OTUs) to infer taxonomic and phylogenetic relationships. Here, we present Hm...

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Detalles Bibliográficos
Autores principales: Zheng, Qi, Bartow-McKenney, Casey, Meisel, Jacquelyn S., Grice, Elizabeth A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6020470/
https://www.ncbi.nlm.nih.gov/pubmed/29950165
http://dx.doi.org/10.1186/s13059-018-1450-0

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6020470/
https://www.ncbi.nlm.nih.gov/pubmed/29950165
http://dx.doi.org/10.1186/s13059-018-1450-0

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