A space and time-efficient index for the compacted colored de Bruijn graph

MOTIVATION: Indexing reference sequences for search—both individual genomes and collections of genomes—is an important building block for many sequence analysis tasks. Much work has been dedicated to developing full-text indices for genomic sequences, based on data structures such as the suffix arra...

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Detalles Bibliográficos
Autores principales: Almodaresi, Fatemeh, Sarkar, Hirak, Srivastava, Avi, Patro, Rob
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Ismb 2018–Intelligent Systems for Molecular Biology Proceedings
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022659/
https://www.ncbi.nlm.nih.gov/pubmed/29949982
http://dx.doi.org/10.1093/bioinformatics/bty292

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6022659/
https://www.ncbi.nlm.nih.gov/pubmed/29949982
http://dx.doi.org/10.1093/bioinformatics/bty292

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