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The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation

The time-dependent rate [Formula: see text] of origin firing per length of unreplicated DNA presents a universal bell shape in eukaryotes that has been interpreted as the result of a complex time-evolving interaction between origins and limiting firing factors. Here, we show that a normal diffusion...

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Autores principales: Arbona, Jean-Michel, Goldar, Arach, Hyrien, Olivier, Arneodo, Alain, Audit, Benjamin
Formato: Online Artículo Texto
Lenguaje:English
Publicado: eLife Sciences Publications, Ltd 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6033540/
https://www.ncbi.nlm.nih.gov/pubmed/29856315
http://dx.doi.org/10.7554/eLife.35192
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author Arbona, Jean-Michel
Goldar, Arach
Hyrien, Olivier
Arneodo, Alain
Audit, Benjamin
author_facet Arbona, Jean-Michel
Goldar, Arach
Hyrien, Olivier
Arneodo, Alain
Audit, Benjamin
author_sort Arbona, Jean-Michel
collection PubMed
description The time-dependent rate [Formula: see text] of origin firing per length of unreplicated DNA presents a universal bell shape in eukaryotes that has been interpreted as the result of a complex time-evolving interaction between origins and limiting firing factors. Here, we show that a normal diffusion of replication fork components towards localized potential replication origins (p-oris) can more simply account for the [Formula: see text] universal bell shape, as a consequence of a competition between the origin firing time and the time needed to replicate DNA separating two neighboring p-oris. We predict the [Formula: see text] maximal value to be the product of the replication fork speed with the squared p-ori density. We show that this relation is robustly observed in simulations and in experimental data for several eukaryotes. Our work underlines that fork-component recycling and potential origins localization are sufficient spatial ingredients to explain the universality of DNA replication kinetics.
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spelling pubmed-60335402018-07-09 The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation Arbona, Jean-Michel Goldar, Arach Hyrien, Olivier Arneodo, Alain Audit, Benjamin eLife Chromosomes and Gene Expression The time-dependent rate [Formula: see text] of origin firing per length of unreplicated DNA presents a universal bell shape in eukaryotes that has been interpreted as the result of a complex time-evolving interaction between origins and limiting firing factors. Here, we show that a normal diffusion of replication fork components towards localized potential replication origins (p-oris) can more simply account for the [Formula: see text] universal bell shape, as a consequence of a competition between the origin firing time and the time needed to replicate DNA separating two neighboring p-oris. We predict the [Formula: see text] maximal value to be the product of the replication fork speed with the squared p-ori density. We show that this relation is robustly observed in simulations and in experimental data for several eukaryotes. Our work underlines that fork-component recycling and potential origins localization are sufficient spatial ingredients to explain the universality of DNA replication kinetics. eLife Sciences Publications, Ltd 2018-06-01 /pmc/articles/PMC6033540/ /pubmed/29856315 http://dx.doi.org/10.7554/eLife.35192 Text en © 2018, Arbona et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited.
spellingShingle Chromosomes and Gene Expression
Arbona, Jean-Michel
Goldar, Arach
Hyrien, Olivier
Arneodo, Alain
Audit, Benjamin
The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation
title The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation
title_full The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation
title_fullStr The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation
title_full_unstemmed The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation
title_short The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation
title_sort eukaryotic bell-shaped temporal rate of dna replication origin firing emanates from a balance between origin activation and passivation
topic Chromosomes and Gene Expression
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6033540/
https://www.ncbi.nlm.nih.gov/pubmed/29856315
http://dx.doi.org/10.7554/eLife.35192
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