Cargando…
The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation
The time-dependent rate [Formula: see text] of origin firing per length of unreplicated DNA presents a universal bell shape in eukaryotes that has been interpreted as the result of a complex time-evolving interaction between origins and limiting firing factors. Here, we show that a normal diffusion...
Autores principales: | , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
eLife Sciences Publications, Ltd
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6033540/ https://www.ncbi.nlm.nih.gov/pubmed/29856315 http://dx.doi.org/10.7554/eLife.35192 |
_version_ | 1783337721289244672 |
---|---|
author | Arbona, Jean-Michel Goldar, Arach Hyrien, Olivier Arneodo, Alain Audit, Benjamin |
author_facet | Arbona, Jean-Michel Goldar, Arach Hyrien, Olivier Arneodo, Alain Audit, Benjamin |
author_sort | Arbona, Jean-Michel |
collection | PubMed |
description | The time-dependent rate [Formula: see text] of origin firing per length of unreplicated DNA presents a universal bell shape in eukaryotes that has been interpreted as the result of a complex time-evolving interaction between origins and limiting firing factors. Here, we show that a normal diffusion of replication fork components towards localized potential replication origins (p-oris) can more simply account for the [Formula: see text] universal bell shape, as a consequence of a competition between the origin firing time and the time needed to replicate DNA separating two neighboring p-oris. We predict the [Formula: see text] maximal value to be the product of the replication fork speed with the squared p-ori density. We show that this relation is robustly observed in simulations and in experimental data for several eukaryotes. Our work underlines that fork-component recycling and potential origins localization are sufficient spatial ingredients to explain the universality of DNA replication kinetics. |
format | Online Article Text |
id | pubmed-6033540 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | eLife Sciences Publications, Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-60335402018-07-09 The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation Arbona, Jean-Michel Goldar, Arach Hyrien, Olivier Arneodo, Alain Audit, Benjamin eLife Chromosomes and Gene Expression The time-dependent rate [Formula: see text] of origin firing per length of unreplicated DNA presents a universal bell shape in eukaryotes that has been interpreted as the result of a complex time-evolving interaction between origins and limiting firing factors. Here, we show that a normal diffusion of replication fork components towards localized potential replication origins (p-oris) can more simply account for the [Formula: see text] universal bell shape, as a consequence of a competition between the origin firing time and the time needed to replicate DNA separating two neighboring p-oris. We predict the [Formula: see text] maximal value to be the product of the replication fork speed with the squared p-ori density. We show that this relation is robustly observed in simulations and in experimental data for several eukaryotes. Our work underlines that fork-component recycling and potential origins localization are sufficient spatial ingredients to explain the universality of DNA replication kinetics. eLife Sciences Publications, Ltd 2018-06-01 /pmc/articles/PMC6033540/ /pubmed/29856315 http://dx.doi.org/10.7554/eLife.35192 Text en © 2018, Arbona et al http://creativecommons.org/licenses/by/4.0/ http://creativecommons.org/licenses/by/4.0/This article is distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use and redistribution provided that the original author and source are credited. |
spellingShingle | Chromosomes and Gene Expression Arbona, Jean-Michel Goldar, Arach Hyrien, Olivier Arneodo, Alain Audit, Benjamin The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation |
title | The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation |
title_full | The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation |
title_fullStr | The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation |
title_full_unstemmed | The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation |
title_short | The eukaryotic bell-shaped temporal rate of DNA replication origin firing emanates from a balance between origin activation and passivation |
title_sort | eukaryotic bell-shaped temporal rate of dna replication origin firing emanates from a balance between origin activation and passivation |
topic | Chromosomes and Gene Expression |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6033540/ https://www.ncbi.nlm.nih.gov/pubmed/29856315 http://dx.doi.org/10.7554/eLife.35192 |
work_keys_str_mv | AT arbonajeanmichel theeukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT goldararach theeukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT hyrienolivier theeukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT arneodoalain theeukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT auditbenjamin theeukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT arbonajeanmichel eukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT goldararach eukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT hyrienolivier eukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT arneodoalain eukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation AT auditbenjamin eukaryoticbellshapedtemporalrateofdnareplicationoriginfiringemanatesfromabalancebetweenoriginactivationandpassivation |