Cargando…

Evolutionary stability of topologically associating domains is associated with conserved gene regulation

BACKGROUND: The human genome is highly organized in the three-dimensional nucleus. Chromosomes fold locally into topologically associating domains (TADs) defined by increased intra-domain chromatin contacts. TADs contribute to gene regulation by restricting chromatin interactions of regulatory seque...

Descripción completa

Detalles Bibliográficos
Autores principales:	Krefting, Jan, Andrade-Navarro, Miguel A., Ibn-Salem, Jonas
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2018
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6091198/ https://www.ncbi.nlm.nih.gov/pubmed/30086749 http://dx.doi.org/10.1186/s12915-018-0556-x

Ejemplares similares

The distributions of protein coding genes within chromatin domains in relation to human disease
por: Muro, Enrique M., et al.
Publicado: (2019)

Co-regulation of paralog genes in the three-dimensional chromatin architecture
por: Ibn-Salem, Jonas, et al.
Publicado: (2017)

7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs
por: Ibn-Salem, Jonas, et al.
Publicado: (2019)

Clustered CTCF binding is an evolutionary mechanism to maintain topologically associating domains
por: Kentepozidou, Elissavet, et al.
Publicado: (2020)

3D organization of chicken genome demonstrates evolutionary conservation of topologically associated domains and highlights unique architecture of erythrocytes’ chromatin
por: Fishman, Veniamin, et al.
Publicado: (2019)

Evolutionary conservation of domain-domain interactions
por: Itzhaki, Zohar, et al.
Publicado: (2006)

Pathogenicity-associated protein domains: The fiercely-conserved evolutionary signatures
por: Patel, Seema
Publicado: (2017)

The features of polyglutamine regions depend on their evolutionary stability
por: Mier, Pablo, et al.
Publicado: (2020)

Regulated Capture of V(κ) Gene Topologically Associating Domains by Transcription Factories
por: Karki, Sophiya, et al.
Publicado: (2018)

Topologically associating domains are ancient features that coincide with Metazoan clusters of extreme noncoding conservation
por: Harmston, Nathan, et al.
Publicado: (2017)

Topologically associating domains are stable units of replication-timing regulation
por: Pope, Benjamin D., et al.
Publicado: (2014)

Stability in gene expression and body-plan development leads to evolutionary conservation
por: Uchida, Yui, et al.
Publicado: (2023)

Topologically associating domains are disrupted by evolutionary genome rearrangements forming species-specific enhancer connections in mice and humans
por: Gilbertson, Sarah E., et al.
Publicado: (2022)

EVEREST: a collection of evolutionary conserved protein domains
por: Portugaly, Elon, et al.
Publicado: (2007)

Late Replication Domains Are Evolutionary Conserved in the Drosophila Genome
por: Andreyenkova, Natalya G., et al.
Publicado: (2013)

Entropy gives rise to topologically associating domains
por: Vasquez, Paula A., et al.
Publicado: (2016)

Principles of genome folding into topologically associating domains
por: Szabo, Quentin, et al.
Publicado: (2019)

TADsplimer reveals splits and mergers of topologically associating domains for epigenetic regulation of transcription
por: Wang, Guangyu, et al.
Publicado: (2020)

Evolutionary conservation of DNA-contact residues in DNA-binding domains
por: Chang, Yao-Lin, et al.
Publicado: (2008)

Glucocorticoid stimulation induces regionalized gene responses within topologically associating domains
por: Tav, Christophe, et al.
Publicado: (2023)

Comparison of computational methods for the identification of topologically associating domains
por: Zufferey, Marie, et al.
Publicado: (2018)

Topologically Associated Domains Delineate Susceptibility to Somatic Hypermutation
por: Senigl, Filip, et al.
Publicado: (2019)

Transcription-coupled structural dynamics of topologically associating domains regulate replication origin efficiency
por: Li, Yongzheng, et al.
Publicado: (2021)

Insights into the evolutionary conserved regulation of Rio ATPase activity
por: Knüppel, Robert, et al.
Publicado: (2018)

The role of epigenetic modifications, long-range contacts, enhancers and topologically associating domains in the regulation of glioma grade-specific genes
por: Grabowicz, Ilona E., et al.
Publicado: (2021)

Comparison of Phylogenetic Tree Topologies for Nitrogen Associated Genes Partially Reconstruct the Evolutionary History of Saccharomyces cerevisiae
por: Villalobos-Cid, Manuel, et al.
Publicado: (2019)

Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
por: Le Dily, François, et al.
Publicado: (2014)

Evolutionary conservation of regulated longevity assurance mechanisms
por: McElwee, Joshua J, et al.
Publicado: (2007)

A critical assessment of topologically associating domain prediction tools
por: Dali, Rola, et al.
Publicado: (2017)

Topologically Associating Domains and Regulatory Landscapes in Development, Evolution and Disease
por: Tena, Juan J., et al.
Publicado: (2021)

KSHV Topologically Associating Domains in Latent and Reactivated Viral Chromatin
por: Campbell, Mel, et al.
Publicado: (2022)

Pattern recognition of topologically associating domains using deep learning
por: Yang, Jhen Yuan, et al.
Publicado: (2022)

Topologically associating domain boundaries are required for normal genome function
por: Rajderkar, Sudha, et al.
Publicado: (2023)

On the power and limits of evolutionary conservation—unraveling bacterial gene regulatory networks
por: Baumbach, Jan
Publicado: (2010)

Unique patterns of evolutionary conservation of imprinted genes
por: Paulsen, Martina
Publicado: (2011)

Evolutionary conservation of the eumetazoan gene regulatory landscape
por: Schwaiger, Michaela, et al.
Publicado: (2014)

Evolutionary conservation of MLO gene promoter signatures
por: Andolfo, Giuseppe, et al.
Publicado: (2019)

Evolutionary and Topological Properties of Genes and Community Structures in Human Gene Regulatory Networks
por: Szedlak, Anthony, et al.
Publicado: (2016)

The topology of evolutionary novelty and innovation in macroevolution
por: Erwin, Douglas H.
Publicado: (2017)

Functional Similarities of Protein-Coding Genes in Topologically Associating Domains and Spatially-Proximate Genomic Regions
por: Zhao, Chenguang, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_q8c26p7f9246c1hro8flkuccrh