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Primary Deuterium Kinetic Isotope Effects: A Probe for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed by Glycerol-3-Phosphate Dehydrogenase
[Image: see text] Large primary deuterium kinetic isotope effects (1° DKIEs) on enzyme-catalyzed hydride transfer may be observed when the transferred hydride tunnels through the energy barrier. The following 1° DKIEs on k(cat)/K(m) and relative reaction driving force are reported for wild-type and...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American
Chemical Society
2018
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6091503/ https://www.ncbi.nlm.nih.gov/pubmed/29927590 http://dx.doi.org/10.1021/acs.biochem.8b00536 |
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author | Reyes, Archie C. Amyes, Tina L. Richard, John P. |
author_facet | Reyes, Archie C. Amyes, Tina L. Richard, John P. |
author_sort | Reyes, Archie C. |
collection | PubMed |
description | [Image: see text] Large primary deuterium kinetic isotope effects (1° DKIEs) on enzyme-catalyzed hydride transfer may be observed when the transferred hydride tunnels through the energy barrier. The following 1° DKIEs on k(cat)/K(m) and relative reaction driving force are reported for wild-type and mutant glycerol-3-phosphate dehydrogenase (GPDH)-catalyzed reactions of NADL (L = H, D): wild-type GPDH, ΔΔG((⧧)) = 0 kcal/mol, 1° DKIE = 1.5; N270A, 5.6 kcal/mol, 3.1; R269A, 9.1 kcal/mol, 2.8; R269A + 1.0 M guanidine, 2.4 kcal/mol, 2.7; R269A/N270A, 11.5 kcal/mol, 2.4. Similar 1° DKIEs were observed on k(cat). The narrow range of 1° DKIEs (2.4–3.1) observed for a 9.1 kcal/mol change in reaction driving force provides strong evidence that these are intrinsic 1° DKIEs on rate-determining hydride transfer. Evidence is presented that the intrinsic DKIE on wild-type GPDH-catalyzed reduction of DHAP lies in this range. A similar range of 1° DKIEs (2.4–2.9) on (k(cat)/K(GA), M(–1) s(–1)) was reported for dianion-activated hydride transfer from NADL to glycolaldehyde (GA) [Reyes, A. C.; Amyes, T. L.; Richard, J. P. J. Am. Chem. Soc.2016, 138, 14526–14529]. These 1° DKIEs are much smaller than those observed for enzyme-catalyzed hydrogen transfer that occurs mainly by quantum mechanical tunneling. These results support the conclusion that the rate acceleration for GPDH-catalyzed reactions is due to the stabilization of the transition state for hydride transfer by interactions with the protein catalyst. The small 1° DKIEs reported for mutant GPDH-catalyzed and for wild-type dianion-activated reactions are inconsistent with a model where the dianion binding energy is utilized in the stabilization of a tunneling ready state. |
format | Online Article Text |
id | pubmed-6091503 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | American
Chemical Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-60915032019-06-21 Primary Deuterium Kinetic Isotope Effects: A Probe for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed by Glycerol-3-Phosphate Dehydrogenase Reyes, Archie C. Amyes, Tina L. Richard, John P. Biochemistry [Image: see text] Large primary deuterium kinetic isotope effects (1° DKIEs) on enzyme-catalyzed hydride transfer may be observed when the transferred hydride tunnels through the energy barrier. The following 1° DKIEs on k(cat)/K(m) and relative reaction driving force are reported for wild-type and mutant glycerol-3-phosphate dehydrogenase (GPDH)-catalyzed reactions of NADL (L = H, D): wild-type GPDH, ΔΔG((⧧)) = 0 kcal/mol, 1° DKIE = 1.5; N270A, 5.6 kcal/mol, 3.1; R269A, 9.1 kcal/mol, 2.8; R269A + 1.0 M guanidine, 2.4 kcal/mol, 2.7; R269A/N270A, 11.5 kcal/mol, 2.4. Similar 1° DKIEs were observed on k(cat). The narrow range of 1° DKIEs (2.4–3.1) observed for a 9.1 kcal/mol change in reaction driving force provides strong evidence that these are intrinsic 1° DKIEs on rate-determining hydride transfer. Evidence is presented that the intrinsic DKIE on wild-type GPDH-catalyzed reduction of DHAP lies in this range. A similar range of 1° DKIEs (2.4–2.9) on (k(cat)/K(GA), M(–1) s(–1)) was reported for dianion-activated hydride transfer from NADL to glycolaldehyde (GA) [Reyes, A. C.; Amyes, T. L.; Richard, J. P. J. Am. Chem. Soc.2016, 138, 14526–14529]. These 1° DKIEs are much smaller than those observed for enzyme-catalyzed hydrogen transfer that occurs mainly by quantum mechanical tunneling. These results support the conclusion that the rate acceleration for GPDH-catalyzed reactions is due to the stabilization of the transition state for hydride transfer by interactions with the protein catalyst. The small 1° DKIEs reported for mutant GPDH-catalyzed and for wild-type dianion-activated reactions are inconsistent with a model where the dianion binding energy is utilized in the stabilization of a tunneling ready state. American Chemical Society 2018-06-21 2018-07-24 /pmc/articles/PMC6091503/ /pubmed/29927590 http://dx.doi.org/10.1021/acs.biochem.8b00536 Text en Copyright © 2018 American Chemical Society This is an open access article published under an ACS AuthorChoice License (http://pubs.acs.org/page/policy/authorchoice_termsofuse.html) , which permits copying and redistribution of the article or any adaptations for non-commercial purposes. |
spellingShingle | Reyes, Archie C. Amyes, Tina L. Richard, John P. Primary Deuterium Kinetic Isotope Effects: A Probe for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed by Glycerol-3-Phosphate Dehydrogenase |
title | Primary Deuterium Kinetic Isotope Effects: A Probe
for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed
by Glycerol-3-Phosphate Dehydrogenase |
title_full | Primary Deuterium Kinetic Isotope Effects: A Probe
for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed
by Glycerol-3-Phosphate Dehydrogenase |
title_fullStr | Primary Deuterium Kinetic Isotope Effects: A Probe
for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed
by Glycerol-3-Phosphate Dehydrogenase |
title_full_unstemmed | Primary Deuterium Kinetic Isotope Effects: A Probe
for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed
by Glycerol-3-Phosphate Dehydrogenase |
title_short | Primary Deuterium Kinetic Isotope Effects: A Probe
for the Origin of the Rate Acceleration for Hydride Transfer Catalyzed
by Glycerol-3-Phosphate Dehydrogenase |
title_sort | primary deuterium kinetic isotope effects: a probe
for the origin of the rate acceleration for hydride transfer catalyzed
by glycerol-3-phosphate dehydrogenase |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6091503/ https://www.ncbi.nlm.nih.gov/pubmed/29927590 http://dx.doi.org/10.1021/acs.biochem.8b00536 |
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