GRASShopPER—An algorithm for de novo assembly based on GPU alignments

Next generation sequencers produce billions of short DNA sequences in a massively parallel manner, which causes a great computational challenge in accurately reconstructing a genome sequence de novo using these short sequences. Here, we propose the GRASShopPER assembler, which follows an approach of...

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Detalles Bibliográficos
Autores principales: Swiercz, Aleksandra, Frohmberg, Wojciech, Kierzynka, Michal, Wojciechowski, Pawel, Zurkowski, Piotr, Badura, Jan, Laskowski, Artur, Kasprzak, Marta, Blazewicz, Jacek
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2018
Materias:
Research Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095601/
https://www.ncbi.nlm.nih.gov/pubmed/30114279
http://dx.doi.org/10.1371/journal.pone.0202355

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6095601/
https://www.ncbi.nlm.nih.gov/pubmed/30114279
http://dx.doi.org/10.1371/journal.pone.0202355

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