Gene expression profiles for a prognostic immunoscore in gastric cancer
BACKGROUND: Increasing evidence has indicated an association between immune infiltration in gastric cancer and clinical outcome. However, reliable prognostic signatures, based on systematic assessments of the immune landscape inferred from bulk tumour transcriptomes, have not been established. The a...
Autores principales: | , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley & Sons, Ltd.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099214/ https://www.ncbi.nlm.nih.gov/pubmed/29691839 http://dx.doi.org/10.1002/bjs.10871 |
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author | Zeng, D. Zhou, R. Yu, Y. Luo, Y. Zhang, J. Sun, H. Bin, J. Liao, Y. Rao, J. Zhang, Y. Liao, W. |
author_facet | Zeng, D. Zhou, R. Yu, Y. Luo, Y. Zhang, J. Sun, H. Bin, J. Liao, Y. Rao, J. Zhang, Y. Liao, W. |
author_sort | Zeng, D. |
collection | PubMed |
description | BACKGROUND: Increasing evidence has indicated an association between immune infiltration in gastric cancer and clinical outcome. However, reliable prognostic signatures, based on systematic assessments of the immune landscape inferred from bulk tumour transcriptomes, have not been established. The aim was to develop an immune signature, based on the cellular composition of the immune infiltrate inferred from bulk tumour transcriptomes, to improve the prognostic predictions of gastric cancer. METHODS: Twenty‐two types of immune cell fraction were estimated based on large public gastric cancer cohorts from the Gene Expression Omnibus using CIBERSORT. An immunoscore based on the fraction of immune cell types was then constructed using a least absolute shrinkage and selection operator (LASSO) Cox regression model. RESULTS: Using the LASSO model, an immunoscore was established consisting of 11 types of immune cell fraction. In the training cohort (490 patients), significant differences were found between high‐ and low‐immunoscore groups in overall survival across and within subpopulations with an identical TNM stage. Multivariable analysis revealed that the immunoscore was an independent prognostic factor (hazard ratio 1·92, 95 per cent c.i. 1·54 to 2·40). The prognostic value of the immunoscore was also confirmed in the validation (210) and entire (700) cohorts. CONCLUSION: The proposed immunoscore represents a promising signature for estimating overall survival in patients with gastric cancer. |
format | Online Article Text |
id | pubmed-6099214 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley & Sons, Ltd. |
record_format | MEDLINE/PubMed |
spelling | pubmed-60992142018-08-23 Gene expression profiles for a prognostic immunoscore in gastric cancer Zeng, D. Zhou, R. Yu, Y. Luo, Y. Zhang, J. Sun, H. Bin, J. Liao, Y. Rao, J. Zhang, Y. Liao, W. Br J Surg Original Articles BACKGROUND: Increasing evidence has indicated an association between immune infiltration in gastric cancer and clinical outcome. However, reliable prognostic signatures, based on systematic assessments of the immune landscape inferred from bulk tumour transcriptomes, have not been established. The aim was to develop an immune signature, based on the cellular composition of the immune infiltrate inferred from bulk tumour transcriptomes, to improve the prognostic predictions of gastric cancer. METHODS: Twenty‐two types of immune cell fraction were estimated based on large public gastric cancer cohorts from the Gene Expression Omnibus using CIBERSORT. An immunoscore based on the fraction of immune cell types was then constructed using a least absolute shrinkage and selection operator (LASSO) Cox regression model. RESULTS: Using the LASSO model, an immunoscore was established consisting of 11 types of immune cell fraction. In the training cohort (490 patients), significant differences were found between high‐ and low‐immunoscore groups in overall survival across and within subpopulations with an identical TNM stage. Multivariable analysis revealed that the immunoscore was an independent prognostic factor (hazard ratio 1·92, 95 per cent c.i. 1·54 to 2·40). The prognostic value of the immunoscore was also confirmed in the validation (210) and entire (700) cohorts. CONCLUSION: The proposed immunoscore represents a promising signature for estimating overall survival in patients with gastric cancer. John Wiley & Sons, Ltd. 2018-04-25 2018-09 /pmc/articles/PMC6099214/ /pubmed/29691839 http://dx.doi.org/10.1002/bjs.10871 Text en © 2018 The Authors. BJS published by John Wiley & Sons Ltd on behalf of BJS Society Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made. |
spellingShingle | Original Articles Zeng, D. Zhou, R. Yu, Y. Luo, Y. Zhang, J. Sun, H. Bin, J. Liao, Y. Rao, J. Zhang, Y. Liao, W. Gene expression profiles for a prognostic immunoscore in gastric cancer |
title | Gene expression profiles for a prognostic immunoscore in gastric cancer |
title_full | Gene expression profiles for a prognostic immunoscore in gastric cancer |
title_fullStr | Gene expression profiles for a prognostic immunoscore in gastric cancer |
title_full_unstemmed | Gene expression profiles for a prognostic immunoscore in gastric cancer |
title_short | Gene expression profiles for a prognostic immunoscore in gastric cancer |
title_sort | gene expression profiles for a prognostic immunoscore in gastric cancer |
topic | Original Articles |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6099214/ https://www.ncbi.nlm.nih.gov/pubmed/29691839 http://dx.doi.org/10.1002/bjs.10871 |
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