TraRECo: a greedy approach based de novo transcriptome assembler with read error correction using consensus matrix

BACKGROUND: The challenges when developing a good de novo transcriptome assembler include how to deal with read errors and sequence repeats. Almost all de novo assemblers utilize a de Bruijn graph, with which complexity grows linearly with data size while suffering from errors and repeats. Although...

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Detalles Bibliográficos
Autores principales: Yoon, Seokhyun, Kim, Daeseung, Kang, Keunsoo, Park, Woong June
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123912/
https://www.ncbi.nlm.nih.gov/pubmed/30180798
http://dx.doi.org/10.1186/s12864-018-5034-x

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6123912/
https://www.ncbi.nlm.nih.gov/pubmed/30180798
http://dx.doi.org/10.1186/s12864-018-5034-x

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