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Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant

Single-particle cryogenic electron microscopy (cryo-EM) provides a powerful methodology for structural biologists, but the resolutions typically attained with experimentally determined structures have lagged behind microscope capabilities. Here, we exploit several technical advances to improve resol...

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Autores principales: Tan, Yong Zi, Aiyer, Sriram, Mietzsch, Mario, Hull, Joshua A., McKenna, Robert, Grieger, Joshua, Samulski, R. Jude, Baker, Timothy S., Agbandje-McKenna, Mavis, Lyumkis, Dmitry
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128836/
https://www.ncbi.nlm.nih.gov/pubmed/30194371
http://dx.doi.org/10.1038/s41467-018-06076-6
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author Tan, Yong Zi
Aiyer, Sriram
Mietzsch, Mario
Hull, Joshua A.
McKenna, Robert
Grieger, Joshua
Samulski, R. Jude
Baker, Timothy S.
Agbandje-McKenna, Mavis
Lyumkis, Dmitry
author_facet Tan, Yong Zi
Aiyer, Sriram
Mietzsch, Mario
Hull, Joshua A.
McKenna, Robert
Grieger, Joshua
Samulski, R. Jude
Baker, Timothy S.
Agbandje-McKenna, Mavis
Lyumkis, Dmitry
author_sort Tan, Yong Zi
collection PubMed
description Single-particle cryogenic electron microscopy (cryo-EM) provides a powerful methodology for structural biologists, but the resolutions typically attained with experimentally determined structures have lagged behind microscope capabilities. Here, we exploit several technical advances to improve resolution, including per-particle contrast transfer function (CTF) refinement and correction for Ewald sphere curvature. The latter is demonstrated with several experimental samples and should become more standard as resolutions increase or at lower microscope accelerating voltages. The combined application of the described methods to micrographs recorded on a Titan Krios enables structure determination at ~1.86-Å resolution of an adeno-associated virus serotype 2 variant (AAV2), an important gene-delivery vehicle. The resulting structural details provide an improved model for understanding the biology of AAV that will guide future vector development for gene therapy.
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spelling pubmed-61288362018-09-10 Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant Tan, Yong Zi Aiyer, Sriram Mietzsch, Mario Hull, Joshua A. McKenna, Robert Grieger, Joshua Samulski, R. Jude Baker, Timothy S. Agbandje-McKenna, Mavis Lyumkis, Dmitry Nat Commun Article Single-particle cryogenic electron microscopy (cryo-EM) provides a powerful methodology for structural biologists, but the resolutions typically attained with experimentally determined structures have lagged behind microscope capabilities. Here, we exploit several technical advances to improve resolution, including per-particle contrast transfer function (CTF) refinement and correction for Ewald sphere curvature. The latter is demonstrated with several experimental samples and should become more standard as resolutions increase or at lower microscope accelerating voltages. The combined application of the described methods to micrographs recorded on a Titan Krios enables structure determination at ~1.86-Å resolution of an adeno-associated virus serotype 2 variant (AAV2), an important gene-delivery vehicle. The resulting structural details provide an improved model for understanding the biology of AAV that will guide future vector development for gene therapy. Nature Publishing Group UK 2018-09-07 /pmc/articles/PMC6128836/ /pubmed/30194371 http://dx.doi.org/10.1038/s41467-018-06076-6 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Tan, Yong Zi
Aiyer, Sriram
Mietzsch, Mario
Hull, Joshua A.
McKenna, Robert
Grieger, Joshua
Samulski, R. Jude
Baker, Timothy S.
Agbandje-McKenna, Mavis
Lyumkis, Dmitry
Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant
title Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant
title_full Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant
title_fullStr Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant
title_full_unstemmed Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant
title_short Sub-2 Å Ewald curvature corrected structure of an AAV2 capsid variant
title_sort sub-2 å ewald curvature corrected structure of an aav2 capsid variant
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6128836/
https://www.ncbi.nlm.nih.gov/pubmed/30194371
http://dx.doi.org/10.1038/s41467-018-06076-6
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