Cargando…
Increasing the length of poly-pyrimidine bulges broadens RNA conformational ensembles with minimal impact on stacking energetics
Helical elements separated by bulges frequently undergo transitions between unstacked and coaxially stacked conformations during the folding and function of noncoding RNAs. Here, we examine the dynamic properties of poly-pyrimidine bulges of varying length (n = 1–4, 7) across a range of Mg(2+) conce...
Autores principales: | Merriman, Dawn K., Yuan, Jiayi, Shi, Honglue, Majumdar, Ananya, Herschlag, Daniel, Al-Hashimi, Hashim M. |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Cold Spring Harbor Laboratory Press
2018
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6140463/ https://www.ncbi.nlm.nih.gov/pubmed/30012568 http://dx.doi.org/10.1261/rna.066258.118 |
Ejemplares similares
-
Why are Hoogsteen base pairs energetically disfavored in A-RNA compared to B-DNA?
por: Rangadurai, Atul, et al.
Publicado: (2018) -
Insights into Watson–Crick/Hoogsteen breathing dynamics and damage repair from the solution structure and dynamic ensemble of DNA duplexes containing m(1)A
por: Sathyamoorthy, Bharathwaj, et al.
Publicado: (2017) -
Coarse
Grained Models Reveal Essential Contributions
of Topological Constraints to the Conformational Free Energy of RNA
Bulges
por: Mustoe, Anthony M., et al.
Publicado: (2014) -
Rapid and accurate determination of atomistic RNA dynamic ensemble models using NMR and structure prediction
por: Shi, Honglue, et al.
Publicado: (2020) -
Pseudouridine and N(6)-methyladenosine modifications weaken PUF protein/RNA interactions
por: Vaidyanathan, Pavanapuresan P., et al.
Publicado: (2017)