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The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response

To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocy...

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Autores principales: Dikhit, Manas Ranjan, Das, Sushmita, Mahantesh, Vijaya, Kumar, Akhilesh, Singh, Ashish Kumar, Dehury, Budheswar, Rout, Ajaya Kumar, Ali, Vahab, Sahoo, Ganesh Chandra, Topno, Roshan Kamal, Pandey, Krishna, Das, V. N. R., Bimal, Sanjiva, Das, Pradeep
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154976/
https://www.ncbi.nlm.nih.gov/pubmed/30242172
http://dx.doi.org/10.1038/s41598-018-32040-x
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author Dikhit, Manas Ranjan
Das, Sushmita
Mahantesh, Vijaya
Kumar, Akhilesh
Singh, Ashish Kumar
Dehury, Budheswar
Rout, Ajaya Kumar
Ali, Vahab
Sahoo, Ganesh Chandra
Topno, Roshan Kamal
Pandey, Krishna
Das, V. N. R.
Bimal, Sanjiva
Das, Pradeep
author_facet Dikhit, Manas Ranjan
Das, Sushmita
Mahantesh, Vijaya
Kumar, Akhilesh
Singh, Ashish Kumar
Dehury, Budheswar
Rout, Ajaya Kumar
Ali, Vahab
Sahoo, Ganesh Chandra
Topno, Roshan Kamal
Pandey, Krishna
Das, V. N. R.
Bimal, Sanjiva
Das, Pradeep
author_sort Dikhit, Manas Ranjan
collection PubMed
description To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocyte antigen, thereby broadening the worldwide population up to 94.16%. This is of reasonable significance that most of the epitopes shared 100% sequence homology with other Leishmania species and could evoke a common pattern of protective immune response. Transporter associated with antigen processing binding affinity, molecular docking approach followed by dynamics simulation and human leukocyte antigen stabilization assay suggested that the best five optimal set of epitopes bind in between α1 and α2 binding groove with sufficient affinity and stability which allows the translocation of intact epitope to the cell surface. Fascinatingly, the human leukocyte antigen stabilization assay exhibited a modest correlation with the positive immunogenicity score predicted by class I pMHC immunogenicity predictor. A support for this notion came from ELISA and FACS analysis where the epitopes as a cocktail induced CD8+ IFN-γ and Granzyme B levels significantly in treated visceral leishmaniasis subject which suggests the immunogenic ability of the selected epitopes.
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spelling pubmed-61549762018-09-28 The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response Dikhit, Manas Ranjan Das, Sushmita Mahantesh, Vijaya Kumar, Akhilesh Singh, Ashish Kumar Dehury, Budheswar Rout, Ajaya Kumar Ali, Vahab Sahoo, Ganesh Chandra Topno, Roshan Kamal Pandey, Krishna Das, V. N. R. Bimal, Sanjiva Das, Pradeep Sci Rep Article To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocyte antigen, thereby broadening the worldwide population up to 94.16%. This is of reasonable significance that most of the epitopes shared 100% sequence homology with other Leishmania species and could evoke a common pattern of protective immune response. Transporter associated with antigen processing binding affinity, molecular docking approach followed by dynamics simulation and human leukocyte antigen stabilization assay suggested that the best five optimal set of epitopes bind in between α1 and α2 binding groove with sufficient affinity and stability which allows the translocation of intact epitope to the cell surface. Fascinatingly, the human leukocyte antigen stabilization assay exhibited a modest correlation with the positive immunogenicity score predicted by class I pMHC immunogenicity predictor. A support for this notion came from ELISA and FACS analysis where the epitopes as a cocktail induced CD8+ IFN-γ and Granzyme B levels significantly in treated visceral leishmaniasis subject which suggests the immunogenic ability of the selected epitopes. Nature Publishing Group UK 2018-09-21 /pmc/articles/PMC6154976/ /pubmed/30242172 http://dx.doi.org/10.1038/s41598-018-32040-x Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Dikhit, Manas Ranjan
Das, Sushmita
Mahantesh, Vijaya
Kumar, Akhilesh
Singh, Ashish Kumar
Dehury, Budheswar
Rout, Ajaya Kumar
Ali, Vahab
Sahoo, Ganesh Chandra
Topno, Roshan Kamal
Pandey, Krishna
Das, V. N. R.
Bimal, Sanjiva
Das, Pradeep
The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
title The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
title_full The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
title_fullStr The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
title_full_unstemmed The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
title_short The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
title_sort potential hla class i-restricted epitopes derived from leif and tsa of leishmania donovani evoke anti-leishmania cd8+ t lymphocyte response
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154976/
https://www.ncbi.nlm.nih.gov/pubmed/30242172
http://dx.doi.org/10.1038/s41598-018-32040-x
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