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The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response
To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocy...
Autores principales: | , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154976/ https://www.ncbi.nlm.nih.gov/pubmed/30242172 http://dx.doi.org/10.1038/s41598-018-32040-x |
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author | Dikhit, Manas Ranjan Das, Sushmita Mahantesh, Vijaya Kumar, Akhilesh Singh, Ashish Kumar Dehury, Budheswar Rout, Ajaya Kumar Ali, Vahab Sahoo, Ganesh Chandra Topno, Roshan Kamal Pandey, Krishna Das, V. N. R. Bimal, Sanjiva Das, Pradeep |
author_facet | Dikhit, Manas Ranjan Das, Sushmita Mahantesh, Vijaya Kumar, Akhilesh Singh, Ashish Kumar Dehury, Budheswar Rout, Ajaya Kumar Ali, Vahab Sahoo, Ganesh Chandra Topno, Roshan Kamal Pandey, Krishna Das, V. N. R. Bimal, Sanjiva Das, Pradeep |
author_sort | Dikhit, Manas Ranjan |
collection | PubMed |
description | To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocyte antigen, thereby broadening the worldwide population up to 94.16%. This is of reasonable significance that most of the epitopes shared 100% sequence homology with other Leishmania species and could evoke a common pattern of protective immune response. Transporter associated with antigen processing binding affinity, molecular docking approach followed by dynamics simulation and human leukocyte antigen stabilization assay suggested that the best five optimal set of epitopes bind in between α1 and α2 binding groove with sufficient affinity and stability which allows the translocation of intact epitope to the cell surface. Fascinatingly, the human leukocyte antigen stabilization assay exhibited a modest correlation with the positive immunogenicity score predicted by class I pMHC immunogenicity predictor. A support for this notion came from ELISA and FACS analysis where the epitopes as a cocktail induced CD8+ IFN-γ and Granzyme B levels significantly in treated visceral leishmaniasis subject which suggests the immunogenic ability of the selected epitopes. |
format | Online Article Text |
id | pubmed-6154976 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61549762018-09-28 The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response Dikhit, Manas Ranjan Das, Sushmita Mahantesh, Vijaya Kumar, Akhilesh Singh, Ashish Kumar Dehury, Budheswar Rout, Ajaya Kumar Ali, Vahab Sahoo, Ganesh Chandra Topno, Roshan Kamal Pandey, Krishna Das, V. N. R. Bimal, Sanjiva Das, Pradeep Sci Rep Article To explore new protective measure against visceral leishmaniasis, reverse vaccinology approach was employed to identify key immunogenic regions which can mediate long-term immunity. In-depth computational analysis revealed nine promiscuous epitopes which can possibly be presented by 46 human leukocyte antigen, thereby broadening the worldwide population up to 94.16%. This is of reasonable significance that most of the epitopes shared 100% sequence homology with other Leishmania species and could evoke a common pattern of protective immune response. Transporter associated with antigen processing binding affinity, molecular docking approach followed by dynamics simulation and human leukocyte antigen stabilization assay suggested that the best five optimal set of epitopes bind in between α1 and α2 binding groove with sufficient affinity and stability which allows the translocation of intact epitope to the cell surface. Fascinatingly, the human leukocyte antigen stabilization assay exhibited a modest correlation with the positive immunogenicity score predicted by class I pMHC immunogenicity predictor. A support for this notion came from ELISA and FACS analysis where the epitopes as a cocktail induced CD8+ IFN-γ and Granzyme B levels significantly in treated visceral leishmaniasis subject which suggests the immunogenic ability of the selected epitopes. Nature Publishing Group UK 2018-09-21 /pmc/articles/PMC6154976/ /pubmed/30242172 http://dx.doi.org/10.1038/s41598-018-32040-x Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Dikhit, Manas Ranjan Das, Sushmita Mahantesh, Vijaya Kumar, Akhilesh Singh, Ashish Kumar Dehury, Budheswar Rout, Ajaya Kumar Ali, Vahab Sahoo, Ganesh Chandra Topno, Roshan Kamal Pandey, Krishna Das, V. N. R. Bimal, Sanjiva Das, Pradeep The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response |
title | The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response |
title_full | The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response |
title_fullStr | The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response |
title_full_unstemmed | The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response |
title_short | The potential HLA Class I-restricted epitopes derived from LeIF and TSA of Leishmania donovani evoke anti-leishmania CD8+ T lymphocyte response |
title_sort | potential hla class i-restricted epitopes derived from leif and tsa of leishmania donovani evoke anti-leishmania cd8+ t lymphocyte response |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6154976/ https://www.ncbi.nlm.nih.gov/pubmed/30242172 http://dx.doi.org/10.1038/s41598-018-32040-x |
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