Cargando…

Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma

The genomic lesions found in malignant tumours exhibit a striking degree of heterogeneity. Many tumours lack a known driver mutation, and their genetic basis is unclear. By mapping the somatic mutations identified in primary lung adenocarcinomas onto an independent coexpression network derived from...

Descripción completa

Detalles Bibliográficos
Autores principales: Bennett, Laura, Howell, Matthew, Memon, Danish, Smowton, Chris, Zhou, Cong, Miller, Crispin J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172282/
https://www.ncbi.nlm.nih.gov/pubmed/30287876
http://dx.doi.org/10.1038/s41598-018-33276-3
_version_ 1783360912936140800
author Bennett, Laura
Howell, Matthew
Memon, Danish
Smowton, Chris
Zhou, Cong
Miller, Crispin J.
author_facet Bennett, Laura
Howell, Matthew
Memon, Danish
Smowton, Chris
Zhou, Cong
Miller, Crispin J.
author_sort Bennett, Laura
collection PubMed
description The genomic lesions found in malignant tumours exhibit a striking degree of heterogeneity. Many tumours lack a known driver mutation, and their genetic basis is unclear. By mapping the somatic mutations identified in primary lung adenocarcinomas onto an independent coexpression network derived from normal tissue, we identify a critical gene network enriched for metastasis-associated genes. While individual genes within this module were rarely mutated, a significant accumulation of mutations within this geneset was predictive of relapse in lung cancer patients that have undergone surgery. Since it is the density of mutations within this module that is informative, rather than the status of any individual gene, these data are in keeping with a ‘mini-driver’ model of tumorigenesis in which multiple mutations, each with a weak effect, combine to form a polygenic driver with sufficient power to significantly alter cell behaviour and ultimately patient outcome. These polygenic mini-drivers therefore provide a means by which heterogeneous mutation patterns can generate the consistent hallmark changes in phenotype observed across tumours.
format Online
Article
Text
id pubmed-6172282
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-61722822018-10-09 Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma Bennett, Laura Howell, Matthew Memon, Danish Smowton, Chris Zhou, Cong Miller, Crispin J. Sci Rep Article The genomic lesions found in malignant tumours exhibit a striking degree of heterogeneity. Many tumours lack a known driver mutation, and their genetic basis is unclear. By mapping the somatic mutations identified in primary lung adenocarcinomas onto an independent coexpression network derived from normal tissue, we identify a critical gene network enriched for metastasis-associated genes. While individual genes within this module were rarely mutated, a significant accumulation of mutations within this geneset was predictive of relapse in lung cancer patients that have undergone surgery. Since it is the density of mutations within this module that is informative, rather than the status of any individual gene, these data are in keeping with a ‘mini-driver’ model of tumorigenesis in which multiple mutations, each with a weak effect, combine to form a polygenic driver with sufficient power to significantly alter cell behaviour and ultimately patient outcome. These polygenic mini-drivers therefore provide a means by which heterogeneous mutation patterns can generate the consistent hallmark changes in phenotype observed across tumours. Nature Publishing Group UK 2018-10-04 /pmc/articles/PMC6172282/ /pubmed/30287876 http://dx.doi.org/10.1038/s41598-018-33276-3 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Bennett, Laura
Howell, Matthew
Memon, Danish
Smowton, Chris
Zhou, Cong
Miller, Crispin J.
Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
title Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
title_full Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
title_fullStr Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
title_full_unstemmed Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
title_short Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
title_sort mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172282/
https://www.ncbi.nlm.nih.gov/pubmed/30287876
http://dx.doi.org/10.1038/s41598-018-33276-3
work_keys_str_mv AT bennettlaura mutationpatternanalysisrevealspolygenicminidriversassociatedwithrelapseaftersurgeryinlungadenocarcinoma
AT howellmatthew mutationpatternanalysisrevealspolygenicminidriversassociatedwithrelapseaftersurgeryinlungadenocarcinoma
AT memondanish mutationpatternanalysisrevealspolygenicminidriversassociatedwithrelapseaftersurgeryinlungadenocarcinoma
AT smowtonchris mutationpatternanalysisrevealspolygenicminidriversassociatedwithrelapseaftersurgeryinlungadenocarcinoma
AT zhoucong mutationpatternanalysisrevealspolygenicminidriversassociatedwithrelapseaftersurgeryinlungadenocarcinoma
AT millercrispinj mutationpatternanalysisrevealspolygenicminidriversassociatedwithrelapseaftersurgeryinlungadenocarcinoma