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Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma
The genomic lesions found in malignant tumours exhibit a striking degree of heterogeneity. Many tumours lack a known driver mutation, and their genetic basis is unclear. By mapping the somatic mutations identified in primary lung adenocarcinomas onto an independent coexpression network derived from...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172282/ https://www.ncbi.nlm.nih.gov/pubmed/30287876 http://dx.doi.org/10.1038/s41598-018-33276-3 |
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author | Bennett, Laura Howell, Matthew Memon, Danish Smowton, Chris Zhou, Cong Miller, Crispin J. |
author_facet | Bennett, Laura Howell, Matthew Memon, Danish Smowton, Chris Zhou, Cong Miller, Crispin J. |
author_sort | Bennett, Laura |
collection | PubMed |
description | The genomic lesions found in malignant tumours exhibit a striking degree of heterogeneity. Many tumours lack a known driver mutation, and their genetic basis is unclear. By mapping the somatic mutations identified in primary lung adenocarcinomas onto an independent coexpression network derived from normal tissue, we identify a critical gene network enriched for metastasis-associated genes. While individual genes within this module were rarely mutated, a significant accumulation of mutations within this geneset was predictive of relapse in lung cancer patients that have undergone surgery. Since it is the density of mutations within this module that is informative, rather than the status of any individual gene, these data are in keeping with a ‘mini-driver’ model of tumorigenesis in which multiple mutations, each with a weak effect, combine to form a polygenic driver with sufficient power to significantly alter cell behaviour and ultimately patient outcome. These polygenic mini-drivers therefore provide a means by which heterogeneous mutation patterns can generate the consistent hallmark changes in phenotype observed across tumours. |
format | Online Article Text |
id | pubmed-6172282 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-61722822018-10-09 Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma Bennett, Laura Howell, Matthew Memon, Danish Smowton, Chris Zhou, Cong Miller, Crispin J. Sci Rep Article The genomic lesions found in malignant tumours exhibit a striking degree of heterogeneity. Many tumours lack a known driver mutation, and their genetic basis is unclear. By mapping the somatic mutations identified in primary lung adenocarcinomas onto an independent coexpression network derived from normal tissue, we identify a critical gene network enriched for metastasis-associated genes. While individual genes within this module were rarely mutated, a significant accumulation of mutations within this geneset was predictive of relapse in lung cancer patients that have undergone surgery. Since it is the density of mutations within this module that is informative, rather than the status of any individual gene, these data are in keeping with a ‘mini-driver’ model of tumorigenesis in which multiple mutations, each with a weak effect, combine to form a polygenic driver with sufficient power to significantly alter cell behaviour and ultimately patient outcome. These polygenic mini-drivers therefore provide a means by which heterogeneous mutation patterns can generate the consistent hallmark changes in phenotype observed across tumours. Nature Publishing Group UK 2018-10-04 /pmc/articles/PMC6172282/ /pubmed/30287876 http://dx.doi.org/10.1038/s41598-018-33276-3 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article Bennett, Laura Howell, Matthew Memon, Danish Smowton, Chris Zhou, Cong Miller, Crispin J. Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma |
title | Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma |
title_full | Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma |
title_fullStr | Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma |
title_full_unstemmed | Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma |
title_short | Mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma |
title_sort | mutation pattern analysis reveals polygenic mini-drivers associated with relapse after surgery in lung adenocarcinoma |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172282/ https://www.ncbi.nlm.nih.gov/pubmed/30287876 http://dx.doi.org/10.1038/s41598-018-33276-3 |
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