SKESA: strategic k-mer extension for scrupulous assemblies

SKESA is a DeBruijn graph-based de-novo assembler designed for assembling reads of microbial genomes sequenced using Illumina. Comparison with SPAdes and MegaHit shows that SKESA produces assemblies that have high sequence quality and contiguity, handles low-level contamination in reads, is fast, an...

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Detalles Bibliográficos
Autores principales: Souvorov, Alexandre, Agarwala, Richa, Lipman, David J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172800/
https://www.ncbi.nlm.nih.gov/pubmed/30286803
http://dx.doi.org/10.1186/s13059-018-1540-z

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6172800/
https://www.ncbi.nlm.nih.gov/pubmed/30286803
http://dx.doi.org/10.1186/s13059-018-1540-z

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