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Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments

Salt bridges are the strongest electrostatic interactions in proteins. They substantially contribute to a protein’s structural stability. Thus, mutations of salt bridges are typically selected against. Here, we report on the evolutionary loss of a highly conserved salt bridge in the GH1 family glyco...

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Autores principales: Mhaindarkar, Dipali, Gasper, Raphael, Lupilov, Natalie, Hofmann, Eckhard, Leichert, Lars I.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6192996/
https://www.ncbi.nlm.nih.gov/pubmed/30345395
http://dx.doi.org/10.1038/s42003-018-0167-7
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author Mhaindarkar, Dipali
Gasper, Raphael
Lupilov, Natalie
Hofmann, Eckhard
Leichert, Lars I.
author_facet Mhaindarkar, Dipali
Gasper, Raphael
Lupilov, Natalie
Hofmann, Eckhard
Leichert, Lars I.
author_sort Mhaindarkar, Dipali
collection PubMed
description Salt bridges are the strongest electrostatic interactions in proteins. They substantially contribute to a protein’s structural stability. Thus, mutations of salt bridges are typically selected against. Here, we report on the evolutionary loss of a highly conserved salt bridge in the GH1 family glycosyl hydrolase BglM-G1. BglM-G1’s gene was found in the bacterial metagenome of a temperate, seasonally cold marine habitat. In BglM-G1, arginine 75 is replaced by a histidine. While fully retaining β-glucosidase activity, BglM-G1 is less heat stable than an H75R variant, in which the salt bridge was artificially re-introduced. However, the K(m) toward its substrates was lower in wild type, leading to an overall higher catalytic efficiency. Our results indicate that this loss of the salt bridge leads to higher flexibility in BglM-G1’s active site, trading structural stability at high temperatures, a trait not needed in a temperate, seasonally cold habitat, for a more effective catalytic activity.
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spelling pubmed-61929962018-10-19 Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments Mhaindarkar, Dipali Gasper, Raphael Lupilov, Natalie Hofmann, Eckhard Leichert, Lars I. Commun Biol Article Salt bridges are the strongest electrostatic interactions in proteins. They substantially contribute to a protein’s structural stability. Thus, mutations of salt bridges are typically selected against. Here, we report on the evolutionary loss of a highly conserved salt bridge in the GH1 family glycosyl hydrolase BglM-G1. BglM-G1’s gene was found in the bacterial metagenome of a temperate, seasonally cold marine habitat. In BglM-G1, arginine 75 is replaced by a histidine. While fully retaining β-glucosidase activity, BglM-G1 is less heat stable than an H75R variant, in which the salt bridge was artificially re-introduced. However, the K(m) toward its substrates was lower in wild type, leading to an overall higher catalytic efficiency. Our results indicate that this loss of the salt bridge leads to higher flexibility in BglM-G1’s active site, trading structural stability at high temperatures, a trait not needed in a temperate, seasonally cold habitat, for a more effective catalytic activity. Nature Publishing Group UK 2018-10-17 /pmc/articles/PMC6192996/ /pubmed/30345395 http://dx.doi.org/10.1038/s42003-018-0167-7 Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Mhaindarkar, Dipali
Gasper, Raphael
Lupilov, Natalie
Hofmann, Eckhard
Leichert, Lars I.
Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments
title Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments
title_full Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments
title_fullStr Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments
title_full_unstemmed Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments
title_short Loss of a conserved salt bridge in bacterial glycosyl hydrolase BgIM-G1 improves substrate binding in temperate environments
title_sort loss of a conserved salt bridge in bacterial glycosyl hydrolase bgim-g1 improves substrate binding in temperate environments
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6192996/
https://www.ncbi.nlm.nih.gov/pubmed/30345395
http://dx.doi.org/10.1038/s42003-018-0167-7
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