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Homeostasis of protein and mRNA concentrations in growing cells

Many experiments show that the numbers of mRNA and protein are proportional to the cell volume in growing cells. However, models of stochastic gene expression often assume constant transcription rate per gene and constant translation rate per mRNA, which are incompatible with these experiments. Here...

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Autores principales: Lin, Jie, Amir, Ariel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206055/
https://www.ncbi.nlm.nih.gov/pubmed/30374016
http://dx.doi.org/10.1038/s41467-018-06714-z
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author Lin, Jie
Amir, Ariel
author_facet Lin, Jie
Amir, Ariel
author_sort Lin, Jie
collection PubMed
description Many experiments show that the numbers of mRNA and protein are proportional to the cell volume in growing cells. However, models of stochastic gene expression often assume constant transcription rate per gene and constant translation rate per mRNA, which are incompatible with these experiments. Here, we construct a minimal gene expression model to fill this gap. Assuming ribosomes and RNA polymerases are limiting in gene expression, we show that the numbers of proteins and mRNAs both grow exponentially during the cell cycle and that the concentrations of all mRNAs and proteins achieve cellular homeostasis; the competition between genes for the RNA polymerases makes the transcription rate independent of the genome number. Furthermore, by extending the model to situations in which DNA (mRNA) can be saturated by RNA polymerases (ribosomes) and becomes limiting, we predict a transition from exponential to linear growth of cell volume as the protein-to-DNA ratio increases.
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spelling pubmed-62060552018-10-31 Homeostasis of protein and mRNA concentrations in growing cells Lin, Jie Amir, Ariel Nat Commun Article Many experiments show that the numbers of mRNA and protein are proportional to the cell volume in growing cells. However, models of stochastic gene expression often assume constant transcription rate per gene and constant translation rate per mRNA, which are incompatible with these experiments. Here, we construct a minimal gene expression model to fill this gap. Assuming ribosomes and RNA polymerases are limiting in gene expression, we show that the numbers of proteins and mRNAs both grow exponentially during the cell cycle and that the concentrations of all mRNAs and proteins achieve cellular homeostasis; the competition between genes for the RNA polymerases makes the transcription rate independent of the genome number. Furthermore, by extending the model to situations in which DNA (mRNA) can be saturated by RNA polymerases (ribosomes) and becomes limiting, we predict a transition from exponential to linear growth of cell volume as the protein-to-DNA ratio increases. Nature Publishing Group UK 2018-10-29 /pmc/articles/PMC6206055/ /pubmed/30374016 http://dx.doi.org/10.1038/s41467-018-06714-z Text en © The Author(s) 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Lin, Jie
Amir, Ariel
Homeostasis of protein and mRNA concentrations in growing cells
title Homeostasis of protein and mRNA concentrations in growing cells
title_full Homeostasis of protein and mRNA concentrations in growing cells
title_fullStr Homeostasis of protein and mRNA concentrations in growing cells
title_full_unstemmed Homeostasis of protein and mRNA concentrations in growing cells
title_short Homeostasis of protein and mRNA concentrations in growing cells
title_sort homeostasis of protein and mrna concentrations in growing cells
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6206055/
https://www.ncbi.nlm.nih.gov/pubmed/30374016
http://dx.doi.org/10.1038/s41467-018-06714-z
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