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In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.
Two compounds termed 1 and 2 were isolated from the leaves of Capsicum chinense using column chromatography. Their structures were identified as amide scaffolds by analyzing spectroscopic signals. Compounds 1 and 2 have been confirmed to be competitive soluble epoxide hydrolase (sEH) inhibitors that...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Research Network of Computational and Structural Biotechnology
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6222292/ https://www.ncbi.nlm.nih.gov/pubmed/30425801 http://dx.doi.org/10.1016/j.csbj.2018.10.017 |
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author | Kim, Jang Hoon Jo, Yeong Deuk Kim, Hyo-Young Kim, Bo-Ram Nam, Bomi |
author_facet | Kim, Jang Hoon Jo, Yeong Deuk Kim, Hyo-Young Kim, Bo-Ram Nam, Bomi |
author_sort | Kim, Jang Hoon |
collection | PubMed |
description | Two compounds termed 1 and 2 were isolated from the leaves of Capsicum chinense using column chromatography. Their structures were identified as amide scaffolds by analyzing spectroscopic signals. Compounds 1 and 2 have been confirmed to be competitive soluble epoxide hydrolase (sEH) inhibitors that suppress the catalytic reaction of sEH in a dose-dependent manner in vitro. Molecular docking was used for analyzing two binding clusters of ligand and receptor. The results confirmed that the key amino acids interacting with the ligand were Asp335, Tyr383, and Gln384. On the basis of molecular dynamics, inhibitors 1 and 2 were noted to interact at a distance of 3.5 Å from Asp335, Tyr383, Leu408 and Tyr466, and Asp335, Tyr383, and Tyr466, respectively. These results highlight the potential of N-trans-coumaroyltyramine (1) and N-trans-feruloyltyramine (2) as sEH inhibitors. |
format | Online Article Text |
id | pubmed-6222292 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Research Network of Computational and Structural Biotechnology |
record_format | MEDLINE/PubMed |
spelling | pubmed-62222922018-11-13 In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. Kim, Jang Hoon Jo, Yeong Deuk Kim, Hyo-Young Kim, Bo-Ram Nam, Bomi Comput Struct Biotechnol J Research Article Two compounds termed 1 and 2 were isolated from the leaves of Capsicum chinense using column chromatography. Their structures were identified as amide scaffolds by analyzing spectroscopic signals. Compounds 1 and 2 have been confirmed to be competitive soluble epoxide hydrolase (sEH) inhibitors that suppress the catalytic reaction of sEH in a dose-dependent manner in vitro. Molecular docking was used for analyzing two binding clusters of ligand and receptor. The results confirmed that the key amino acids interacting with the ligand were Asp335, Tyr383, and Gln384. On the basis of molecular dynamics, inhibitors 1 and 2 were noted to interact at a distance of 3.5 Å from Asp335, Tyr383, Leu408 and Tyr466, and Asp335, Tyr383, and Tyr466, respectively. These results highlight the potential of N-trans-coumaroyltyramine (1) and N-trans-feruloyltyramine (2) as sEH inhibitors. Research Network of Computational and Structural Biotechnology 2018-10-31 /pmc/articles/PMC6222292/ /pubmed/30425801 http://dx.doi.org/10.1016/j.csbj.2018.10.017 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Research Article Kim, Jang Hoon Jo, Yeong Deuk Kim, Hyo-Young Kim, Bo-Ram Nam, Bomi In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. |
title | In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. |
title_full | In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. |
title_fullStr | In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. |
title_full_unstemmed | In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. |
title_short | In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. |
title_sort | in vitro and in silico insights into seh inhibitors with amide-scaffold from the leaves of capsicum chinense jacq. |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6222292/ https://www.ncbi.nlm.nih.gov/pubmed/30425801 http://dx.doi.org/10.1016/j.csbj.2018.10.017 |
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