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In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.

Two compounds termed 1 and 2 were isolated from the leaves of Capsicum chinense using column chromatography. Their structures were identified as amide scaffolds by analyzing spectroscopic signals. Compounds 1 and 2 have been confirmed to be competitive soluble epoxide hydrolase (sEH) inhibitors that...

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Autores principales: Kim, Jang Hoon, Jo, Yeong Deuk, Kim, Hyo-Young, Kim, Bo-Ram, Nam, Bomi
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Research Network of Computational and Structural Biotechnology 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6222292/
https://www.ncbi.nlm.nih.gov/pubmed/30425801
http://dx.doi.org/10.1016/j.csbj.2018.10.017
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author Kim, Jang Hoon
Jo, Yeong Deuk
Kim, Hyo-Young
Kim, Bo-Ram
Nam, Bomi
author_facet Kim, Jang Hoon
Jo, Yeong Deuk
Kim, Hyo-Young
Kim, Bo-Ram
Nam, Bomi
author_sort Kim, Jang Hoon
collection PubMed
description Two compounds termed 1 and 2 were isolated from the leaves of Capsicum chinense using column chromatography. Their structures were identified as amide scaffolds by analyzing spectroscopic signals. Compounds 1 and 2 have been confirmed to be competitive soluble epoxide hydrolase (sEH) inhibitors that suppress the catalytic reaction of sEH in a dose-dependent manner in vitro. Molecular docking was used for analyzing two binding clusters of ligand and receptor. The results confirmed that the key amino acids interacting with the ligand were Asp335, Tyr383, and Gln384. On the basis of molecular dynamics, inhibitors 1 and 2 were noted to interact at a distance of 3.5 Å from Asp335, Tyr383, Leu408 and Tyr466, and Asp335, Tyr383, and Tyr466, respectively. These results highlight the potential of N-trans-coumaroyltyramine (1) and N-trans-feruloyltyramine (2) as sEH inhibitors.
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spelling pubmed-62222922018-11-13 In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq. Kim, Jang Hoon Jo, Yeong Deuk Kim, Hyo-Young Kim, Bo-Ram Nam, Bomi Comput Struct Biotechnol J Research Article Two compounds termed 1 and 2 were isolated from the leaves of Capsicum chinense using column chromatography. Their structures were identified as amide scaffolds by analyzing spectroscopic signals. Compounds 1 and 2 have been confirmed to be competitive soluble epoxide hydrolase (sEH) inhibitors that suppress the catalytic reaction of sEH in a dose-dependent manner in vitro. Molecular docking was used for analyzing two binding clusters of ligand and receptor. The results confirmed that the key amino acids interacting with the ligand were Asp335, Tyr383, and Gln384. On the basis of molecular dynamics, inhibitors 1 and 2 were noted to interact at a distance of 3.5 Å from Asp335, Tyr383, Leu408 and Tyr466, and Asp335, Tyr383, and Tyr466, respectively. These results highlight the potential of N-trans-coumaroyltyramine (1) and N-trans-feruloyltyramine (2) as sEH inhibitors. Research Network of Computational and Structural Biotechnology 2018-10-31 /pmc/articles/PMC6222292/ /pubmed/30425801 http://dx.doi.org/10.1016/j.csbj.2018.10.017 Text en © 2018 The Authors http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Research Article
Kim, Jang Hoon
Jo, Yeong Deuk
Kim, Hyo-Young
Kim, Bo-Ram
Nam, Bomi
In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.
title In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.
title_full In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.
title_fullStr In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.
title_full_unstemmed In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.
title_short In Vitro and In Silico Insights into sEH Inhibitors with Amide-Scaffold from the Leaves of Capsicum chinense Jacq.
title_sort in vitro and in silico insights into seh inhibitors with amide-scaffold from the leaves of capsicum chinense jacq.
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6222292/
https://www.ncbi.nlm.nih.gov/pubmed/30425801
http://dx.doi.org/10.1016/j.csbj.2018.10.017
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