Cargando…

Mathematical modeling identifies potential gene structure determinants of co-transcriptional control of alternative pre-mRNA splicing

Mostrar otras versiones (1)

The spliceosome catalyzes the removal of introns from pre-messenger RNA (mRNA) and subsequent pairing of exons with remarkable fidelity. Some exons are known to be skipped or included in the mature mRNA in a cell type- or context-dependent manner (cassette exons), thereby contributing to the diversi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Davis-Turak, Jeremy, Johnson, Tracy L, Hoffmann, Alexander
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2018
Materias:	Computational Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6237756/ https://www.ncbi.nlm.nih.gov/pubmed/30272246 http://dx.doi.org/10.1093/nar/gky870

Ejemplares similares

Mathematical modeling identifies potential gene structure determinants of co-transcriptional control of alternative pre-mRNA splicing
por: Davis-Turak, Jeremy, et al.
Publicado: (2019)

Considering the kinetics of mRNA synthesis in the analysis of the genome and epigenome reveals determinants of co-transcriptional splicing
por: Davis-Turak, Jeremy C., et al.
Publicado: (2015)

Pathway-guided analysis identifies Myc-dependent alternative pre-mRNA splicing in aggressive prostate cancers
por: Phillips, John W., et al.
Publicado: (2020)

Differential Recruitment of Pre-mRNA Splicing Factors to Alternatively Spliced Transcripts In Vivo
por: Mabon, Stephen A, et al.
Publicado: (2005)

The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture
por: Pai, Athma A, et al.
Publicado: (2017)

IRIS: Discovery of cancer immunotherapy targets arising from pre-mRNA alternative splicing
por: Pan, Yang, et al.
Publicado: (2023)

Accurate prediction of NAGNAG alternative splicing
por: Sinha, Rileen, et al.
Publicado: (2009)

Prediction of alternative pre-mRNA splicing outcomes
por: Najjar, Rayan, et al.
Publicado: (2023)

C6 pyridinium ceramide influences alternative pre-mRNA splicing by inhibiting protein phosphatase-1
por: Sumanasekera, Chiranthani, et al.
Publicado: (2012)

A correlation with exon expression approach to identify cis-regulatory elements for tissue-specific alternative splicing
por: Das, Debopriya, et al.
Publicado: (2007)

Identification of alternative 5′/3′ splice sites based on the mechanism of splice site competition
por: Xia, Huiyu, et al.
Publicado: (2006)

NSrp70 is a novel nuclear speckle-related protein that modulates alternative pre-mRNA splicing in vivo
por: Kim, Young-Dae, et al.
Publicado: (2011)

The Function of Pre-mRNA Alternative Splicing in Mammal Spermatogenesis
por: Song, Huibin, et al.
Publicado: (2020)

Alternative Splicing of Pre-mRNA in the Control of Immune Activity
por: Su, Zhongjing, et al.
Publicado: (2021)

The role of alternative pre-mRNA splicing in cancer progression
por: Choi, Sunkyung, et al.
Publicado: (2023)

Gene Array Analyzer: alternative usage of gene arrays to study alternative splicing events
por: Gellert, Pascal, et al.
Publicado: (2012)

OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds
por: Wu, Jie, et al.
Publicado: (2013)

U1-independent pre-mRNA splicing contributes to the regulation of alternative splicing
por: Fukumura, Kazuhiro, et al.
Publicado: (2009)

Pre-mRNA Processing Factors and Retinitis Pigmentosa: RNA Splicing and Beyond
por: Yang, Chunbo, et al.
Publicado: (2021)

Re-splicing of mature mRNA in cancer cells promotes activation of distant weak alternative splice sites
por: Kameyama, Toshiki, et al.
Publicado: (2012)

Automethylation of CARM1 allows coupling of transcription and mRNA splicing
por: Kuhn, Peter, et al.
Publicado: (2011)

Non-coding functions of alternative pre-mRNA splicing in development
por: Mockenhaupt, Stefan, et al.
Publicado: (2015)

The implications of alternative pre-mRNA splicing in cell signal transduction
por: Choi, Sunkyung, et al.
Publicado: (2023)

A network of conserved co-occurring motifs for the regulation of alternative splicing
por: Suyama, Mikita, et al.
Publicado: (2010)

Quantitative prediction of variant effects on alternative splicing in MAPT using endogenous pre-messenger RNA structure probing
por: Kumar, Jayashree, et al.
Publicado: (2022)

Alternative splicing and genetic diversity: silencers are more frequently modified by SNVs associated with alternative exon/intron borders
por: de Souza, Jorge E. S., et al.
Publicado: (2011)

FAK alternative splice mRNA variants expression pattern in colorectal cancer
por: Devaud, Christel, et al.
Publicado: (2019)

Pre-mRNA Splicing Is a Determinant of Nucleosome Organization
por: Keren-Shaul, Hadas, et al.
Publicado: (2013)

Pre-mRNA splicing is a determinant of nucleosome organization
por: Keren-Shaul, Hadas, et al.
Publicado: (2013)

Genome level analysis of rice mRNA 3′-end processing signals and alternative polyadenylation
por: Shen, Yingjia, et al.
Publicado: (2008)

Numerical modelling of microRNA-mediated mRNA decay identifies novel mechanism of microRNA controlled mRNA downregulation
por: Vohradsky, Jiri, et al.
Publicado: (2010)

Thiomorpholino oligonucleotides as a robust class of next generation platforms for alternate mRNA splicing
por: Le, Bao T., et al.
Publicado: (2022)

Inflammation-Induced Alternative Pre-mRNA Splicing in Mouse Alveolar Macrophages
por: Janssen, William J., et al.
Publicado: (2019)

Detection of recurrent alternative splicing switches in tumor samples reveals novel signatures of cancer
por: Sebestyén, Endre, et al.
Publicado: (2015)

Targeting alternative splicing by RNAi: from the differential impact on splice variants to triggering artificial pre-mRNA splicing
por: Fuchs, Armin, et al.
Publicado: (2021)

SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis in Arabidopsis
por: Kathare, Praveen Kumar, et al.
Publicado: (2022)

Human prefoldin modulates co-transcriptional pre-mRNA splicing
por: Payán-Bravo, Laura, et al.
Publicado: (2021)

Verification of alternative splicing variants based on domain integrity, truncation length and intrinsic protein disorder
por: Hegyi, Hedi, et al.
Publicado: (2011)

Computational identification of tissue-specific alternative splicing elements in mouse genes from RNA-Seq
por: Wen, Ji, et al.
Publicado: (2010)

Characterisation of the biflavonoid hinokiflavone as a pre-mRNA splicing modulator that inhibits SENP
por: Pawellek, Andrea, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_s9dv63u5vh1hmu56gkrtn9mlmv