DNA sequences alignment in multi-GPUs: acceleration and energy payoff

BACKGROUND: We present a performance per watt analysis of CUDAlign 4.0, a parallel strategy to obtain the optimal pairwise alignment of huge DNA sequences in multi-GPU platforms using the exact Smith-Waterman method. RESULTS: Our study includes acceleration factors, performance, scalability, power e...

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Detalles Bibliográficos
Autores principales: Pérez-Serrano, Jesús, Sandes, Edans, Magalhaes Alves de Melo, Alba Cristina, Ujaldón, Manuel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245493/
https://www.ncbi.nlm.nih.gov/pubmed/30453877
http://dx.doi.org/10.1186/s12859-018-2389-6

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6245493/
https://www.ncbi.nlm.nih.gov/pubmed/30453877
http://dx.doi.org/10.1186/s12859-018-2389-6

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