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2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates

BACKGROUND: Adhesins or microbial surface component recognizing adhesive matrix molecules (MSCRAMMs) and the ica locus help mediate S. aureus adherence to host tissue and biofilm formation and are thought to play important roles in the pathogenesis of device related infections (DRIs). We hypothesize...

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Autores principales: Foster, Catherine, Kok, Melissa, Flores, Anthony, Luna, Ruth Ann, Kaplan, Sheldon L, Hulten, Kristina G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6254756/
http://dx.doi.org/10.1093/ofid/ofy210.1960
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author Foster, Catherine
Kok, Melissa
Flores, Anthony
Luna, Ruth Ann
Kaplan, Sheldon L
Hulten, Kristina G
author_facet Foster, Catherine
Kok, Melissa
Flores, Anthony
Luna, Ruth Ann
Kaplan, Sheldon L
Hulten, Kristina G
author_sort Foster, Catherine
collection PubMed
description BACKGROUND: Adhesins or microbial surface component recognizing adhesive matrix molecules (MSCRAMMs) and the ica locus help mediate S. aureus adherence to host tissue and biofilm formation and are thought to play important roles in the pathogenesis of device related infections (DRIs). We hypothesized that S. aureus isolates from pediatric DRIs differ in MSCRAMM and biofilm-associated gene profiles and display greater strain diversity compared with skin and soft-tissue infection (SSTI) isolates. METHODS: Patients and isolates were identified from a prospective S. aureus surveillance study at Texas Children’s Hospital, 2008–2016. Clinical data were collected retrospectively. Age and date of infection matched SSTI control isolates were selected 4:1. Isolates were genotyped by pulsed-field gel electrophoresis. Whole genome sequencing was performed (Illumina MiSeq). Data were analyzed with CLC Genomics Workbench for the presence of MSCRAMMS (clfA, clfB, ebh, fbp, fnbpA, fnbpB, isdA, isdB, sdrC, sdrD, sdrE), biofilm-associated genes (icaA,D,B,C), accessory gene regulator group, and by multilocus-sequence typing (MLST) with eBurst analysis (www.phyloviz.net). Conditional logistic regression and Fisher’s exact were used for analysis (STATA11). RESULTS: Forty-five patients with 47 DRIs were identified (Table 1). Isolates from 47 DRIs and 188 SSTIs were analyzed for the presence of MSCRAMM and biofilm-associated genes. clfA, clfB, fbp, isdA, isdB, and icaA,D,B,C were present among DRIs and SSTIs more than 98% of the time. Isolates from DRIs or SSTIs did not differ significantly in carriage of MSCRAMMs or the ica locus. DRIs were MSSA (34, 72%), nonUSA300 (39, 83%), and belonged to 19 sequence types (STs). SSTIs were MSSA (79, 42%), nonUSA300 (57, 30%), and belonged to 39 STs (Table 2). Among DRI isolates, STs 5 and 8 were most common (23% each, Figure 1). SSTI isolates were predominately ST8 (68%). CONCLUSION: S. aureus isolates from DRIs were significantly more likely to be MSSA and nonUSA300 (P < 0.0001 for both) compared with SSTIs. The majority of S. aureus isolates harbored all MSCRAMM and biofilm-associated genes analyzed. Evaluating genetic polymorphisms and gene expression profiles may clarify the role of adhesion genes in the pathogenesis of DRIs vs. SSTIs. [Image: see text] [Image: see text] [Image: see text] DISCLOSURES: All authors: No reported disclosures.
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spelling pubmed-62547562018-11-28 2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates Foster, Catherine Kok, Melissa Flores, Anthony Luna, Ruth Ann Kaplan, Sheldon L Hulten, Kristina G Open Forum Infect Dis Abstracts BACKGROUND: Adhesins or microbial surface component recognizing adhesive matrix molecules (MSCRAMMs) and the ica locus help mediate S. aureus adherence to host tissue and biofilm formation and are thought to play important roles in the pathogenesis of device related infections (DRIs). We hypothesized that S. aureus isolates from pediatric DRIs differ in MSCRAMM and biofilm-associated gene profiles and display greater strain diversity compared with skin and soft-tissue infection (SSTI) isolates. METHODS: Patients and isolates were identified from a prospective S. aureus surveillance study at Texas Children’s Hospital, 2008–2016. Clinical data were collected retrospectively. Age and date of infection matched SSTI control isolates were selected 4:1. Isolates were genotyped by pulsed-field gel electrophoresis. Whole genome sequencing was performed (Illumina MiSeq). Data were analyzed with CLC Genomics Workbench for the presence of MSCRAMMS (clfA, clfB, ebh, fbp, fnbpA, fnbpB, isdA, isdB, sdrC, sdrD, sdrE), biofilm-associated genes (icaA,D,B,C), accessory gene regulator group, and by multilocus-sequence typing (MLST) with eBurst analysis (www.phyloviz.net). Conditional logistic regression and Fisher’s exact were used for analysis (STATA11). RESULTS: Forty-five patients with 47 DRIs were identified (Table 1). Isolates from 47 DRIs and 188 SSTIs were analyzed for the presence of MSCRAMM and biofilm-associated genes. clfA, clfB, fbp, isdA, isdB, and icaA,D,B,C were present among DRIs and SSTIs more than 98% of the time. Isolates from DRIs or SSTIs did not differ significantly in carriage of MSCRAMMs or the ica locus. DRIs were MSSA (34, 72%), nonUSA300 (39, 83%), and belonged to 19 sequence types (STs). SSTIs were MSSA (79, 42%), nonUSA300 (57, 30%), and belonged to 39 STs (Table 2). Among DRI isolates, STs 5 and 8 were most common (23% each, Figure 1). SSTI isolates were predominately ST8 (68%). CONCLUSION: S. aureus isolates from DRIs were significantly more likely to be MSSA and nonUSA300 (P < 0.0001 for both) compared with SSTIs. The majority of S. aureus isolates harbored all MSCRAMM and biofilm-associated genes analyzed. Evaluating genetic polymorphisms and gene expression profiles may clarify the role of adhesion genes in the pathogenesis of DRIs vs. SSTIs. [Image: see text] [Image: see text] [Image: see text] DISCLOSURES: All authors: No reported disclosures. Oxford University Press 2018-11-26 /pmc/articles/PMC6254756/ http://dx.doi.org/10.1093/ofid/ofy210.1960 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Infectious Diseases Society of America. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial-NoDerivs licence (http://creativecommons.org/licenses/by-nc-nd/4.0/), which permits non-commercial reproduction and distribution of the work, in any medium, provided the original work is not altered or transformed in any way, and that the work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Abstracts
Foster, Catherine
Kok, Melissa
Flores, Anthony
Luna, Ruth Ann
Kaplan, Sheldon L
Hulten, Kristina G
2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates
title 2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates
title_full 2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates
title_fullStr 2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates
title_full_unstemmed 2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates
title_short 2307. Use of Whole-Genome Sequencing to Determine Adhesin and Biofilm-Associated Gene Profiles Among Pediatric Staphylococcus aureus Device-Related Infection Isolates Compared With Skin and Soft-Tissue Infection Isolates
title_sort 2307. use of whole-genome sequencing to determine adhesin and biofilm-associated gene profiles among pediatric staphylococcus aureus device-related infection isolates compared with skin and soft-tissue infection isolates
topic Abstracts
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6254756/
http://dx.doi.org/10.1093/ofid/ofy210.1960
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