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Evolution of weak cooperative interactions for biological specificity

A hallmark of biological systems is that particular functions and outcomes are realized in specific contexts, such as when particular signals are received. One mechanism for mediating specificity is described by Fisher’s “lock and key” metaphor, exemplified by enzymes that bind selectively to a part...

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Detalles Bibliográficos
Autores principales: Gao, Ang, Shrinivas, Krishna, Lepeudry, Paul, Suzuki, Hiroshi I., Sharp, Phillip A., Chakraborty, Arup K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255166/
https://www.ncbi.nlm.nih.gov/pubmed/30404915
http://dx.doi.org/10.1073/pnas.1815912115
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author Gao, Ang
Shrinivas, Krishna
Lepeudry, Paul
Suzuki, Hiroshi I.
Sharp, Phillip A.
Chakraborty, Arup K.
author_facet Gao, Ang
Shrinivas, Krishna
Lepeudry, Paul
Suzuki, Hiroshi I.
Sharp, Phillip A.
Chakraborty, Arup K.
author_sort Gao, Ang
collection PubMed
description A hallmark of biological systems is that particular functions and outcomes are realized in specific contexts, such as when particular signals are received. One mechanism for mediating specificity is described by Fisher’s “lock and key” metaphor, exemplified by enzymes that bind selectively to a particular substrate via specific finely tuned interactions. Another mechanism, more prevalent in multicellular organisms, relies on multivalent weak cooperative interactions. Its importance has recently been illustrated by the recognition that liquid-liquid phase transitions underlie the formation of membraneless condensates that perform specific cellular functions. Based on computer simulations of an evolutionary model, we report that the latter mechanism likely became evolutionarily prominent when a large number of tasks had to be performed specifically for organisms to function properly. We find that the emergence of weak cooperative interactions for mediating specificity results in organisms that can evolve to accomplish new tasks with fewer, and likely less lethal, mutations. We argue that this makes the system more capable of undergoing evolutionary changes robustly, and thus this mechanism has been repeatedly positively selected in increasingly complex organisms. Specificity mediated by weak cooperative interactions results in some useful cross-reactivity for related tasks, but at the same time increases susceptibility to misregulation that might lead to pathologies.
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spelling pubmed-62551662018-11-30 Evolution of weak cooperative interactions for biological specificity Gao, Ang Shrinivas, Krishna Lepeudry, Paul Suzuki, Hiroshi I. Sharp, Phillip A. Chakraborty, Arup K. Proc Natl Acad Sci U S A PNAS Plus A hallmark of biological systems is that particular functions and outcomes are realized in specific contexts, such as when particular signals are received. One mechanism for mediating specificity is described by Fisher’s “lock and key” metaphor, exemplified by enzymes that bind selectively to a particular substrate via specific finely tuned interactions. Another mechanism, more prevalent in multicellular organisms, relies on multivalent weak cooperative interactions. Its importance has recently been illustrated by the recognition that liquid-liquid phase transitions underlie the formation of membraneless condensates that perform specific cellular functions. Based on computer simulations of an evolutionary model, we report that the latter mechanism likely became evolutionarily prominent when a large number of tasks had to be performed specifically for organisms to function properly. We find that the emergence of weak cooperative interactions for mediating specificity results in organisms that can evolve to accomplish new tasks with fewer, and likely less lethal, mutations. We argue that this makes the system more capable of undergoing evolutionary changes robustly, and thus this mechanism has been repeatedly positively selected in increasingly complex organisms. Specificity mediated by weak cooperative interactions results in some useful cross-reactivity for related tasks, but at the same time increases susceptibility to misregulation that might lead to pathologies. National Academy of Sciences 2018-11-20 2018-11-07 /pmc/articles/PMC6255166/ /pubmed/30404915 http://dx.doi.org/10.1073/pnas.1815912115 Text en Copyright © 2018 the Author(s). Published by PNAS. http://creativecommons.org/licenses/by/4.0/ This open access article is distributed under Creative Commons Attribution License 4.0 (CC BY) (http://creativecommons.org/licenses/by/4.0/) .
spellingShingle PNAS Plus
Gao, Ang
Shrinivas, Krishna
Lepeudry, Paul
Suzuki, Hiroshi I.
Sharp, Phillip A.
Chakraborty, Arup K.
Evolution of weak cooperative interactions for biological specificity
title Evolution of weak cooperative interactions for biological specificity
title_full Evolution of weak cooperative interactions for biological specificity
title_fullStr Evolution of weak cooperative interactions for biological specificity
title_full_unstemmed Evolution of weak cooperative interactions for biological specificity
title_short Evolution of weak cooperative interactions for biological specificity
title_sort evolution of weak cooperative interactions for biological specificity
topic PNAS Plus
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6255166/
https://www.ncbi.nlm.nih.gov/pubmed/30404915
http://dx.doi.org/10.1073/pnas.1815912115
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