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Efficient computation of spaced seed hashing with block indexing
BACKGROUND: Spaced-seeds, i.e. patterns in which some fixed positions are allowed to be wild-cards, play a crucial role in several bioinformatics applications involving substrings counting and indexing, by often providing better sensitivity with respect to k-mers based approaches. K-mers based appro...
| Autores principales: | , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2018
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| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6266934/ https://www.ncbi.nlm.nih.gov/pubmed/30497364 http://dx.doi.org/10.1186/s12859-018-2415-8 |