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Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic?

Mendelian randomization (MR) is gaining in recognition and popularity as a method for strengthening causal inference in epidemiology by utilizing genetic variants as instrumental variables. Concurrently with the explosion in empirical MR studies, there has been the steady production of new approache...

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Detalles Bibliográficos
Autores principales: Bowden, Jack, Hemani, Gibran, Davey Smith, George
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6269239/
https://www.ncbi.nlm.nih.gov/pubmed/30188969
http://dx.doi.org/10.1093/aje/kwy185
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author Bowden, Jack
Hemani, Gibran
Davey Smith, George
author_facet Bowden, Jack
Hemani, Gibran
Davey Smith, George
author_sort Bowden, Jack
collection PubMed
description Mendelian randomization (MR) is gaining in recognition and popularity as a method for strengthening causal inference in epidemiology by utilizing genetic variants as instrumental variables. Concurrently with the explosion in empirical MR studies, there has been the steady production of new approaches for MR analysis. The recently proposed “global and individual tests for direct effects” (GLIDE) approach fits into a family of methods that aim to detect horizontal pleiotropy—at the individual single nucleotide polymorphism level and at the global level—and to adjust the analysis by removing outlying single nucleotide polymorphisms. In this commentary, we explain how existing methods can (and indeed are) being used to detect pleiotropy at the individual and global levels, although not explicitly using this terminology. By doing so, we show that the true comparator for GLIDE is not MR-Egger regression (as Dai et al., the authors of the accompanying article (Am J Epidemiol. 2018;187(12):2672–2680), claim) but rather the humble heterogeneity statistic.
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spelling pubmed-62692392018-12-06 Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic? Bowden, Jack Hemani, Gibran Davey Smith, George Am J Epidemiol Invited Commentaries Mendelian randomization (MR) is gaining in recognition and popularity as a method for strengthening causal inference in epidemiology by utilizing genetic variants as instrumental variables. Concurrently with the explosion in empirical MR studies, there has been the steady production of new approaches for MR analysis. The recently proposed “global and individual tests for direct effects” (GLIDE) approach fits into a family of methods that aim to detect horizontal pleiotropy—at the individual single nucleotide polymorphism level and at the global level—and to adjust the analysis by removing outlying single nucleotide polymorphisms. In this commentary, we explain how existing methods can (and indeed are) being used to detect pleiotropy at the individual and global levels, although not explicitly using this terminology. By doing so, we show that the true comparator for GLIDE is not MR-Egger regression (as Dai et al., the authors of the accompanying article (Am J Epidemiol. 2018;187(12):2672–2680), claim) but rather the humble heterogeneity statistic. Oxford University Press 2018-12 2018-09-05 /pmc/articles/PMC6269239/ /pubmed/30188969 http://dx.doi.org/10.1093/aje/kwy185 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of the Johns Hopkins Bloomberg School of Public Health. http://creativecommons.org/licenses/by/4.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Invited Commentaries
Bowden, Jack
Hemani, Gibran
Davey Smith, George
Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic?
title Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic?
title_full Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic?
title_fullStr Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic?
title_full_unstemmed Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic?
title_short Invited Commentary: Detecting Individual and Global Horizontal Pleiotropy in Mendelian Randomization—A Job for the Humble Heterogeneity Statistic?
title_sort invited commentary: detecting individual and global horizontal pleiotropy in mendelian randomization—a job for the humble heterogeneity statistic?
topic Invited Commentaries
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6269239/
https://www.ncbi.nlm.nih.gov/pubmed/30188969
http://dx.doi.org/10.1093/aje/kwy185
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