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Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu
Macromolecular crowding is known to affect protein folding, binding of small molecules, interaction with nucleic acids, enzymatic activity, protein-protein interactions, and protein aggregation. Although for a long time it was believed that the major mechanism of the action of crowded environments o...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2015
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272634/ https://www.ncbi.nlm.nih.gov/pubmed/25594347 http://dx.doi.org/10.3390/molecules20011377 |
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author | Kuznetsova, Irina M. Zaslavsky, Boris Y. Breydo, Leonid Turoverov, Konstantin K. Uversky, Vladimir N. |
author_facet | Kuznetsova, Irina M. Zaslavsky, Boris Y. Breydo, Leonid Turoverov, Konstantin K. Uversky, Vladimir N. |
author_sort | Kuznetsova, Irina M. |
collection | PubMed |
description | Macromolecular crowding is known to affect protein folding, binding of small molecules, interaction with nucleic acids, enzymatic activity, protein-protein interactions, and protein aggregation. Although for a long time it was believed that the major mechanism of the action of crowded environments on structure, folding, thermodynamics, and function of a protein can be described in terms of the excluded volume effects, it is getting clear now that other factors originating from the presence of high concentrations of “inert” macromolecules in crowded solution should definitely be taken into account to draw a more complete picture of a protein in a crowded milieu. This review shows that in addition to the excluded volume effects important players of the crowded environments are viscosity, perturbed diffusion, direct physical interactions between the crowding agents and proteins, soft interactions, and, most importantly, the effects of crowders on solvent properties. |
format | Online Article Text |
id | pubmed-6272634 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2015 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-62726342018-12-28 Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu Kuznetsova, Irina M. Zaslavsky, Boris Y. Breydo, Leonid Turoverov, Konstantin K. Uversky, Vladimir N. Molecules Review Macromolecular crowding is known to affect protein folding, binding of small molecules, interaction with nucleic acids, enzymatic activity, protein-protein interactions, and protein aggregation. Although for a long time it was believed that the major mechanism of the action of crowded environments on structure, folding, thermodynamics, and function of a protein can be described in terms of the excluded volume effects, it is getting clear now that other factors originating from the presence of high concentrations of “inert” macromolecules in crowded solution should definitely be taken into account to draw a more complete picture of a protein in a crowded milieu. This review shows that in addition to the excluded volume effects important players of the crowded environments are viscosity, perturbed diffusion, direct physical interactions between the crowding agents and proteins, soft interactions, and, most importantly, the effects of crowders on solvent properties. MDPI 2015-01-14 /pmc/articles/PMC6272634/ /pubmed/25594347 http://dx.doi.org/10.3390/molecules20011377 Text en © 2015 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Review Kuznetsova, Irina M. Zaslavsky, Boris Y. Breydo, Leonid Turoverov, Konstantin K. Uversky, Vladimir N. Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu |
title | Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu |
title_full | Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu |
title_fullStr | Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu |
title_full_unstemmed | Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu |
title_short | Beyond the Excluded Volume Effects: Mechanistic Complexity of the Crowded Milieu |
title_sort | beyond the excluded volume effects: mechanistic complexity of the crowded milieu |
topic | Review |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6272634/ https://www.ncbi.nlm.nih.gov/pubmed/25594347 http://dx.doi.org/10.3390/molecules20011377 |
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