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A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS
It is often unclear what specific adaptive trial design features lead to an efficient design which is also feasible to implement. Before deciding on a particular design, it is generally advisable to carry out a simulation study to characterise the properties of candidate designs under a range of pla...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
John Wiley and Sons Inc.
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283249/ https://www.ncbi.nlm.nih.gov/pubmed/30215881 http://dx.doi.org/10.1002/pst.1897 |
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author | Hansen, Christian Holm Warner, Pamela Walker, Allan Parker, Richard A. Whitaker, Lucy Critchley, Hilary O.D. Weir, Christopher J. |
author_facet | Hansen, Christian Holm Warner, Pamela Walker, Allan Parker, Richard A. Whitaker, Lucy Critchley, Hilary O.D. Weir, Christopher J. |
author_sort | Hansen, Christian Holm |
collection | PubMed |
description | It is often unclear what specific adaptive trial design features lead to an efficient design which is also feasible to implement. Before deciding on a particular design, it is generally advisable to carry out a simulation study to characterise the properties of candidate designs under a range of plausible assumptions. The implementation of such pre‐trial simulation studies presents many challenges and requires considerable statistical programming effort and time. Despite the scale and complexity, there is little existing literature to guide the implementation of such projects using commonly available software. This Teacher's Corner article provides a practical step‐by‐step guide to implementing such simulation studies including how to specify and fit a Bayesian model in WinBUGS or OpenBUGS using SAS, and how results from the Bayesian analysis may be pulled back into SAS and used for adaptation of allocation probabilities before simulating subsequent stages of the trial. The interface between the two software platforms is described in detail along with useful tips and tricks. A key strength of our approach is that the entire exercise can be defined and controlled from within a single SAS program. |
format | Online Article Text |
id | pubmed-6283249 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | John Wiley and Sons Inc. |
record_format | MEDLINE/PubMed |
spelling | pubmed-62832492018-12-14 A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS Hansen, Christian Holm Warner, Pamela Walker, Allan Parker, Richard A. Whitaker, Lucy Critchley, Hilary O.D. Weir, Christopher J. Pharm Stat Teachers' Corner It is often unclear what specific adaptive trial design features lead to an efficient design which is also feasible to implement. Before deciding on a particular design, it is generally advisable to carry out a simulation study to characterise the properties of candidate designs under a range of plausible assumptions. The implementation of such pre‐trial simulation studies presents many challenges and requires considerable statistical programming effort and time. Despite the scale and complexity, there is little existing literature to guide the implementation of such projects using commonly available software. This Teacher's Corner article provides a practical step‐by‐step guide to implementing such simulation studies including how to specify and fit a Bayesian model in WinBUGS or OpenBUGS using SAS, and how results from the Bayesian analysis may be pulled back into SAS and used for adaptation of allocation probabilities before simulating subsequent stages of the trial. The interface between the two software platforms is described in detail along with useful tips and tricks. A key strength of our approach is that the entire exercise can be defined and controlled from within a single SAS program. John Wiley and Sons Inc. 2018-09-14 2018 /pmc/articles/PMC6283249/ /pubmed/30215881 http://dx.doi.org/10.1002/pst.1897 Text en © 2018 The Authors. Pharmaceutical Statistics Published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Teachers' Corner Hansen, Christian Holm Warner, Pamela Walker, Allan Parker, Richard A. Whitaker, Lucy Critchley, Hilary O.D. Weir, Christopher J. A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS |
title | A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS |
title_full | A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS |
title_fullStr | A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS |
title_full_unstemmed | A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS |
title_short | A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS |
title_sort | practical guide to pre‐trial simulations for bayesian adaptive trials using sas and bugs |
topic | Teachers' Corner |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283249/ https://www.ncbi.nlm.nih.gov/pubmed/30215881 http://dx.doi.org/10.1002/pst.1897 |
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