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A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS

It is often unclear what specific adaptive trial design features lead to an efficient design which is also feasible to implement. Before deciding on a particular design, it is generally advisable to carry out a simulation study to characterise the properties of candidate designs under a range of pla...

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Autores principales: Hansen, Christian Holm, Warner, Pamela, Walker, Allan, Parker, Richard A., Whitaker, Lucy, Critchley, Hilary O.D., Weir, Christopher J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283249/
https://www.ncbi.nlm.nih.gov/pubmed/30215881
http://dx.doi.org/10.1002/pst.1897
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author Hansen, Christian Holm
Warner, Pamela
Walker, Allan
Parker, Richard A.
Whitaker, Lucy
Critchley, Hilary O.D.
Weir, Christopher J.
author_facet Hansen, Christian Holm
Warner, Pamela
Walker, Allan
Parker, Richard A.
Whitaker, Lucy
Critchley, Hilary O.D.
Weir, Christopher J.
author_sort Hansen, Christian Holm
collection PubMed
description It is often unclear what specific adaptive trial design features lead to an efficient design which is also feasible to implement. Before deciding on a particular design, it is generally advisable to carry out a simulation study to characterise the properties of candidate designs under a range of plausible assumptions. The implementation of such pre‐trial simulation studies presents many challenges and requires considerable statistical programming effort and time. Despite the scale and complexity, there is little existing literature to guide the implementation of such projects using commonly available software. This Teacher's Corner article provides a practical step‐by‐step guide to implementing such simulation studies including how to specify and fit a Bayesian model in WinBUGS or OpenBUGS using SAS, and how results from the Bayesian analysis may be pulled back into SAS and used for adaptation of allocation probabilities before simulating subsequent stages of the trial. The interface between the two software platforms is described in detail along with useful tips and tricks. A key strength of our approach is that the entire exercise can be defined and controlled from within a single SAS program.
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spelling pubmed-62832492018-12-14 A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS Hansen, Christian Holm Warner, Pamela Walker, Allan Parker, Richard A. Whitaker, Lucy Critchley, Hilary O.D. Weir, Christopher J. Pharm Stat Teachers' Corner It is often unclear what specific adaptive trial design features lead to an efficient design which is also feasible to implement. Before deciding on a particular design, it is generally advisable to carry out a simulation study to characterise the properties of candidate designs under a range of plausible assumptions. The implementation of such pre‐trial simulation studies presents many challenges and requires considerable statistical programming effort and time. Despite the scale and complexity, there is little existing literature to guide the implementation of such projects using commonly available software. This Teacher's Corner article provides a practical step‐by‐step guide to implementing such simulation studies including how to specify and fit a Bayesian model in WinBUGS or OpenBUGS using SAS, and how results from the Bayesian analysis may be pulled back into SAS and used for adaptation of allocation probabilities before simulating subsequent stages of the trial. The interface between the two software platforms is described in detail along with useful tips and tricks. A key strength of our approach is that the entire exercise can be defined and controlled from within a single SAS program. John Wiley and Sons Inc. 2018-09-14 2018 /pmc/articles/PMC6283249/ /pubmed/30215881 http://dx.doi.org/10.1002/pst.1897 Text en © 2018 The Authors. Pharmaceutical Statistics Published by John Wiley & Sons Ltd. This is an open access article under the terms of the http://creativecommons.org/licenses/by/4.0/ License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.
spellingShingle Teachers' Corner
Hansen, Christian Holm
Warner, Pamela
Walker, Allan
Parker, Richard A.
Whitaker, Lucy
Critchley, Hilary O.D.
Weir, Christopher J.
A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS
title A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS
title_full A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS
title_fullStr A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS
title_full_unstemmed A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS
title_short A practical guide to pre‐trial simulations for Bayesian adaptive trials using SAS and BUGS
title_sort practical guide to pre‐trial simulations for bayesian adaptive trials using sas and bugs
topic Teachers' Corner
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6283249/
https://www.ncbi.nlm.nih.gov/pubmed/30215881
http://dx.doi.org/10.1002/pst.1897
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