Cargando…

Binding of HMGN proteins to cell specific enhancers stabilizes cell identity

The dynamic nature of the chromatin epigenetic landscape plays a key role in the establishment and maintenance of cell identity, yet the factors that affect the dynamics of the epigenome are not fully known. Here we find that the ubiquitous nucleosome binding proteins HMGN1 and HMGN2 preferentially...

Descripción completa

Detalles Bibliográficos
Autores principales: He, Bing, Deng, Tao, Zhu, Iris, Furusawa, Takashi, Zhang, Shaofei, Tang, Wei, Postnikov, Yuri, Ambs, Stefan, Li, Caiyi Cherry, Livak, Ferenc, Landsman, David, Bustin, Michael
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6286339/
https://www.ncbi.nlm.nih.gov/pubmed/30532006
http://dx.doi.org/10.1038/s41467-018-07687-9
_version_ 1783379432911667200
author He, Bing
Deng, Tao
Zhu, Iris
Furusawa, Takashi
Zhang, Shaofei
Tang, Wei
Postnikov, Yuri
Ambs, Stefan
Li, Caiyi Cherry
Livak, Ferenc
Landsman, David
Bustin, Michael
author_facet He, Bing
Deng, Tao
Zhu, Iris
Furusawa, Takashi
Zhang, Shaofei
Tang, Wei
Postnikov, Yuri
Ambs, Stefan
Li, Caiyi Cherry
Livak, Ferenc
Landsman, David
Bustin, Michael
author_sort He, Bing
collection PubMed
description The dynamic nature of the chromatin epigenetic landscape plays a key role in the establishment and maintenance of cell identity, yet the factors that affect the dynamics of the epigenome are not fully known. Here we find that the ubiquitous nucleosome binding proteins HMGN1 and HMGN2 preferentially colocalize with epigenetic marks of active chromatin, and with cell-type specific enhancers. Loss of HMGNs enhances the rate of OSKM induced reprogramming of mouse embryonic fibroblasts (MEFs) into induced pluripotent stem cells (iPSCs), and the ASCL1 induced conversion of fibroblast into neurons. During transcription factor induced reprogramming to pluripotency, loss of HMGNs accelerates the erasure of the MEF-specific epigenetic landscape and the establishment of an iPSCs-specific chromatin landscape, without affecting the pluripotency potential and the differentiation potential of the reprogrammed cells. Thus, HMGN proteins modulate the plasticity of the chromatin epigenetic landscape thereby stabilizing, rather than determining cell identity.
format Online
Article
Text
id pubmed-6286339
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher Nature Publishing Group UK
record_format MEDLINE/PubMed
spelling pubmed-62863392018-12-11 Binding of HMGN proteins to cell specific enhancers stabilizes cell identity He, Bing Deng, Tao Zhu, Iris Furusawa, Takashi Zhang, Shaofei Tang, Wei Postnikov, Yuri Ambs, Stefan Li, Caiyi Cherry Livak, Ferenc Landsman, David Bustin, Michael Nat Commun Article The dynamic nature of the chromatin epigenetic landscape plays a key role in the establishment and maintenance of cell identity, yet the factors that affect the dynamics of the epigenome are not fully known. Here we find that the ubiquitous nucleosome binding proteins HMGN1 and HMGN2 preferentially colocalize with epigenetic marks of active chromatin, and with cell-type specific enhancers. Loss of HMGNs enhances the rate of OSKM induced reprogramming of mouse embryonic fibroblasts (MEFs) into induced pluripotent stem cells (iPSCs), and the ASCL1 induced conversion of fibroblast into neurons. During transcription factor induced reprogramming to pluripotency, loss of HMGNs accelerates the erasure of the MEF-specific epigenetic landscape and the establishment of an iPSCs-specific chromatin landscape, without affecting the pluripotency potential and the differentiation potential of the reprogrammed cells. Thus, HMGN proteins modulate the plasticity of the chromatin epigenetic landscape thereby stabilizing, rather than determining cell identity. Nature Publishing Group UK 2018-12-07 /pmc/articles/PMC6286339/ /pubmed/30532006 http://dx.doi.org/10.1038/s41467-018-07687-9 Text en © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
He, Bing
Deng, Tao
Zhu, Iris
Furusawa, Takashi
Zhang, Shaofei
Tang, Wei
Postnikov, Yuri
Ambs, Stefan
Li, Caiyi Cherry
Livak, Ferenc
Landsman, David
Bustin, Michael
Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
title Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
title_full Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
title_fullStr Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
title_full_unstemmed Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
title_short Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
title_sort binding of hmgn proteins to cell specific enhancers stabilizes cell identity
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6286339/
https://www.ncbi.nlm.nih.gov/pubmed/30532006
http://dx.doi.org/10.1038/s41467-018-07687-9
work_keys_str_mv AT hebing bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT dengtao bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT zhuiris bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT furusawatakashi bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT zhangshaofei bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT tangwei bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT postnikovyuri bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT ambsstefan bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT licaiyicherry bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT livakferenc bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT landsmandavid bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity
AT bustinmichael bindingofhmgnproteinstocellspecificenhancersstabilizescellidentity