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Binding of HMGN proteins to cell specific enhancers stabilizes cell identity
The dynamic nature of the chromatin epigenetic landscape plays a key role in the establishment and maintenance of cell identity, yet the factors that affect the dynamics of the epigenome are not fully known. Here we find that the ubiquitous nucleosome binding proteins HMGN1 and HMGN2 preferentially...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Nature Publishing Group UK
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6286339/ https://www.ncbi.nlm.nih.gov/pubmed/30532006 http://dx.doi.org/10.1038/s41467-018-07687-9 |
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author | He, Bing Deng, Tao Zhu, Iris Furusawa, Takashi Zhang, Shaofei Tang, Wei Postnikov, Yuri Ambs, Stefan Li, Caiyi Cherry Livak, Ferenc Landsman, David Bustin, Michael |
author_facet | He, Bing Deng, Tao Zhu, Iris Furusawa, Takashi Zhang, Shaofei Tang, Wei Postnikov, Yuri Ambs, Stefan Li, Caiyi Cherry Livak, Ferenc Landsman, David Bustin, Michael |
author_sort | He, Bing |
collection | PubMed |
description | The dynamic nature of the chromatin epigenetic landscape plays a key role in the establishment and maintenance of cell identity, yet the factors that affect the dynamics of the epigenome are not fully known. Here we find that the ubiquitous nucleosome binding proteins HMGN1 and HMGN2 preferentially colocalize with epigenetic marks of active chromatin, and with cell-type specific enhancers. Loss of HMGNs enhances the rate of OSKM induced reprogramming of mouse embryonic fibroblasts (MEFs) into induced pluripotent stem cells (iPSCs), and the ASCL1 induced conversion of fibroblast into neurons. During transcription factor induced reprogramming to pluripotency, loss of HMGNs accelerates the erasure of the MEF-specific epigenetic landscape and the establishment of an iPSCs-specific chromatin landscape, without affecting the pluripotency potential and the differentiation potential of the reprogrammed cells. Thus, HMGN proteins modulate the plasticity of the chromatin epigenetic landscape thereby stabilizing, rather than determining cell identity. |
format | Online Article Text |
id | pubmed-6286339 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | Nature Publishing Group UK |
record_format | MEDLINE/PubMed |
spelling | pubmed-62863392018-12-11 Binding of HMGN proteins to cell specific enhancers stabilizes cell identity He, Bing Deng, Tao Zhu, Iris Furusawa, Takashi Zhang, Shaofei Tang, Wei Postnikov, Yuri Ambs, Stefan Li, Caiyi Cherry Livak, Ferenc Landsman, David Bustin, Michael Nat Commun Article The dynamic nature of the chromatin epigenetic landscape plays a key role in the establishment and maintenance of cell identity, yet the factors that affect the dynamics of the epigenome are not fully known. Here we find that the ubiquitous nucleosome binding proteins HMGN1 and HMGN2 preferentially colocalize with epigenetic marks of active chromatin, and with cell-type specific enhancers. Loss of HMGNs enhances the rate of OSKM induced reprogramming of mouse embryonic fibroblasts (MEFs) into induced pluripotent stem cells (iPSCs), and the ASCL1 induced conversion of fibroblast into neurons. During transcription factor induced reprogramming to pluripotency, loss of HMGNs accelerates the erasure of the MEF-specific epigenetic landscape and the establishment of an iPSCs-specific chromatin landscape, without affecting the pluripotency potential and the differentiation potential of the reprogrammed cells. Thus, HMGN proteins modulate the plasticity of the chromatin epigenetic landscape thereby stabilizing, rather than determining cell identity. Nature Publishing Group UK 2018-12-07 /pmc/articles/PMC6286339/ /pubmed/30532006 http://dx.doi.org/10.1038/s41467-018-07687-9 Text en © This is a U.S. government work and not under copyright protection in the U.S.; foreign copyright protection may apply 2018 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/. |
spellingShingle | Article He, Bing Deng, Tao Zhu, Iris Furusawa, Takashi Zhang, Shaofei Tang, Wei Postnikov, Yuri Ambs, Stefan Li, Caiyi Cherry Livak, Ferenc Landsman, David Bustin, Michael Binding of HMGN proteins to cell specific enhancers stabilizes cell identity |
title | Binding of HMGN proteins to cell specific enhancers stabilizes cell identity |
title_full | Binding of HMGN proteins to cell specific enhancers stabilizes cell identity |
title_fullStr | Binding of HMGN proteins to cell specific enhancers stabilizes cell identity |
title_full_unstemmed | Binding of HMGN proteins to cell specific enhancers stabilizes cell identity |
title_short | Binding of HMGN proteins to cell specific enhancers stabilizes cell identity |
title_sort | binding of hmgn proteins to cell specific enhancers stabilizes cell identity |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6286339/ https://www.ncbi.nlm.nih.gov/pubmed/30532006 http://dx.doi.org/10.1038/s41467-018-07687-9 |
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