GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts

SUMMARY: We present an updated version of our computational pipeline, PathSeq, for the discovery and identification of microbial sequences in genomic and transcriptomic libraries from eukaryotic hosts. This pipeline is available in the Genome Analysis Toolkit (GATK) as a suite of configurable tools...

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Detalles Bibliográficos
Autores principales: Walker, Mark A, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I, Bullman, Susan, Sharpe, Ted, Whelan, Christopher W, Meyerson, Matthew
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2018
Materias:
Applications Notes
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6289130/
https://www.ncbi.nlm.nih.gov/pubmed/29982281
http://dx.doi.org/10.1093/bioinformatics/bty501

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6289130/
https://www.ncbi.nlm.nih.gov/pubmed/29982281
http://dx.doi.org/10.1093/bioinformatics/bty501

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