Cargando…

A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging

OBJECTIVE: Invertebrates are productive models for understanding how inflammation, metabolism and aging are intertwined. We have deployed a dsRNA library screen to search for genes in Drosophila melanogaster—and hence identify human orthologs—that encode participants in a G-protein coupled, Ca(2+)-s...

Descripción completa

Detalles Bibliográficos
Autores principales: Sung, Eui Jae, Shears, Stephen B.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6293519/
https://www.ncbi.nlm.nih.gov/pubmed/30545410
http://dx.doi.org/10.1186/s13104-018-3996-z
_version_ 1783380550554222592
author Sung, Eui Jae
Shears, Stephen B.
author_facet Sung, Eui Jae
Shears, Stephen B.
author_sort Sung, Eui Jae
collection PubMed
description OBJECTIVE: Invertebrates are productive models for understanding how inflammation, metabolism and aging are intertwined. We have deployed a dsRNA library screen to search for genes in Drosophila melanogaster—and hence identify human orthologs—that encode participants in a G-protein coupled, Ca(2+)-signaling pathway that regulates inflammation, metabolism and lifespan. RESULTS: We analyzed receptor-dependent, phospholipase C/Ca(2+) signaling responses to the growth-blocking peptide (GBP) cytokine in Drosophila S3 cells plated in 384-well plates containing dsRNAs that target approximately 14,000 Drosophila genes. We used Z-scores of < − 3 or > + 3 to define gene hits. Filtering of ‘housekeeping’ genes from these hits yielded a total of 82 and 61 Drosophila genes that either down-regulate or up-regulate Ca(2+)-signaling, respectively; representatives from these two groups were validated. Human orthologs of our hits may be modulators of Ca(2+) signaling in general, as well as being candidates for acting in molecular pathways that interconnect aging and inflammation.
format Online
Article
Text
id pubmed-6293519
institution National Center for Biotechnology Information
language English
publishDate 2018
publisher BioMed Central
record_format MEDLINE/PubMed
spelling pubmed-62935192018-12-17 A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging Sung, Eui Jae Shears, Stephen B. BMC Res Notes Research Note OBJECTIVE: Invertebrates are productive models for understanding how inflammation, metabolism and aging are intertwined. We have deployed a dsRNA library screen to search for genes in Drosophila melanogaster—and hence identify human orthologs—that encode participants in a G-protein coupled, Ca(2+)-signaling pathway that regulates inflammation, metabolism and lifespan. RESULTS: We analyzed receptor-dependent, phospholipase C/Ca(2+) signaling responses to the growth-blocking peptide (GBP) cytokine in Drosophila S3 cells plated in 384-well plates containing dsRNAs that target approximately 14,000 Drosophila genes. We used Z-scores of < − 3 or > + 3 to define gene hits. Filtering of ‘housekeeping’ genes from these hits yielded a total of 82 and 61 Drosophila genes that either down-regulate or up-regulate Ca(2+)-signaling, respectively; representatives from these two groups were validated. Human orthologs of our hits may be modulators of Ca(2+) signaling in general, as well as being candidates for acting in molecular pathways that interconnect aging and inflammation. BioMed Central 2018-12-13 /pmc/articles/PMC6293519/ /pubmed/30545410 http://dx.doi.org/10.1186/s13104-018-3996-z Text en © The Author(s) 2018 Open AccessThis article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.
spellingShingle Research Note
Sung, Eui Jae
Shears, Stephen B.
A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging
title A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging
title_full A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging
title_fullStr A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging
title_full_unstemmed A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging
title_short A genome-wide dsRNA library screen for Drosophila genes that regulate the GBP/phospholipase C signaling axis that links inflammation to aging
title_sort genome-wide dsrna library screen for drosophila genes that regulate the gbp/phospholipase c signaling axis that links inflammation to aging
topic Research Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6293519/
https://www.ncbi.nlm.nih.gov/pubmed/30545410
http://dx.doi.org/10.1186/s13104-018-3996-z
work_keys_str_mv AT sungeuijae agenomewidedsrnalibraryscreenfordrosophilagenesthatregulatethegbpphospholipasecsignalingaxisthatlinksinflammationtoaging
AT shearsstephenb agenomewidedsrnalibraryscreenfordrosophilagenesthatregulatethegbpphospholipasecsignalingaxisthatlinksinflammationtoaging
AT sungeuijae genomewidedsrnalibraryscreenfordrosophilagenesthatregulatethegbpphospholipasecsignalingaxisthatlinksinflammationtoaging
AT shearsstephenb genomewidedsrnalibraryscreenfordrosophilagenesthatregulatethegbpphospholipasecsignalingaxisthatlinksinflammationtoaging