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Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration
One of small accessory genes between pol and env is tat gene encoding TAT protein. This research was aimed to optimize the expression of Jembrana TAT (JTAT) protein with preparing Escherichia coli (E. coli) in advance using adopted methods of M1 (MgCl(2) + CaCl(2)) and M2 (CaCl(2) + Glycerol). The b...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Academy of Scientific Research and Technology, Egypt
2017
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296586/ https://www.ncbi.nlm.nih.gov/pubmed/30647694 http://dx.doi.org/10.1016/j.jgeb.2017.06.009 |
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author | Margawati, Endang Tri Fuad, Asrul Muhamad Indriawati Ridwan, Muhamad Volkandari, Slamet Diah |
author_facet | Margawati, Endang Tri Fuad, Asrul Muhamad Indriawati Ridwan, Muhamad Volkandari, Slamet Diah |
author_sort | Margawati, Endang Tri |
collection | PubMed |
description | One of small accessory genes between pol and env is tat gene encoding TAT protein. This research was aimed to optimize the expression of Jembrana TAT (JTAT) protein with preparing Escherichia coli (E. coli) in advance using adopted methods of M1 (MgCl(2) + CaCl(2)) and M2 (CaCl(2) + Glycerol). The best transformation efficiency resulting from a better transformation method was used to subsequent expression of JTAT protein. A synthetic tat gene encoding protein JTAT was previously cloned into pBT-hisC. Concentration of 200; 400; 600 µM IPTG was induced to a small volume culture (200 ml; OD(600) = 4), incubated for 3 h. Pellets were harvested by centrifugation (4000 rpm; 4 °C; 15 min). Buffer B (10 mM Immidazole) was added into pellets, lysed by freeze-thaw followed by sonication. Supernatant was collected by centrifugation (10,000 rpm; 4 °C; 20 min) and purified using Ni-NTA Agarose resin, released by elution buffer (E) containing 400 mM Immidazole to collect purified protein twice (E1, E2). The protein was characterized by SDS-PAGE and Western Blot (WB), quantified (at λ595 nm) with BSA standard method in prior. The result showed that transformation efficiency was better in M2 (2.53 × 10(6)) than M1 (3.10 × 10(5)). The JTAT protein was expressed at a right size of 11.8 kDa. Concentration of 200 µM IPTG produced a significantly better protein yield (1.500 ± 0.089 mg/ml; P < 0.05) than 600 µM IPTG (0.896 ± 0.052 mg/ml) and not different to 400 µM IPTG (1.298 ± 0.080 mg/ml). This research indicated that transformation efficiency needs to be taken account in prior of optimization of the protein expression. |
format | Online Article Text |
id | pubmed-6296586 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2017 |
publisher | Academy of Scientific Research and Technology, Egypt |
record_format | MEDLINE/PubMed |
spelling | pubmed-62965862019-01-15 Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration Margawati, Endang Tri Fuad, Asrul Muhamad Indriawati Ridwan, Muhamad Volkandari, Slamet Diah J Genet Eng Biotechnol Others (In silico & Biochemistry) One of small accessory genes between pol and env is tat gene encoding TAT protein. This research was aimed to optimize the expression of Jembrana TAT (JTAT) protein with preparing Escherichia coli (E. coli) in advance using adopted methods of M1 (MgCl(2) + CaCl(2)) and M2 (CaCl(2) + Glycerol). The best transformation efficiency resulting from a better transformation method was used to subsequent expression of JTAT protein. A synthetic tat gene encoding protein JTAT was previously cloned into pBT-hisC. Concentration of 200; 400; 600 µM IPTG was induced to a small volume culture (200 ml; OD(600) = 4), incubated for 3 h. Pellets were harvested by centrifugation (4000 rpm; 4 °C; 15 min). Buffer B (10 mM Immidazole) was added into pellets, lysed by freeze-thaw followed by sonication. Supernatant was collected by centrifugation (10,000 rpm; 4 °C; 20 min) and purified using Ni-NTA Agarose resin, released by elution buffer (E) containing 400 mM Immidazole to collect purified protein twice (E1, E2). The protein was characterized by SDS-PAGE and Western Blot (WB), quantified (at λ595 nm) with BSA standard method in prior. The result showed that transformation efficiency was better in M2 (2.53 × 10(6)) than M1 (3.10 × 10(5)). The JTAT protein was expressed at a right size of 11.8 kDa. Concentration of 200 µM IPTG produced a significantly better protein yield (1.500 ± 0.089 mg/ml; P < 0.05) than 600 µM IPTG (0.896 ± 0.052 mg/ml) and not different to 400 µM IPTG (1.298 ± 0.080 mg/ml). This research indicated that transformation efficiency needs to be taken account in prior of optimization of the protein expression. Academy of Scientific Research and Technology, Egypt 2017-12 2017-07-06 /pmc/articles/PMC6296586/ /pubmed/30647694 http://dx.doi.org/10.1016/j.jgeb.2017.06.009 Text en © 2017 Production and hosting by Elsevier B.V. on behalf of Academy of Scientific Research & Technology. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). |
spellingShingle | Others (In silico & Biochemistry) Margawati, Endang Tri Fuad, Asrul Muhamad Indriawati Ridwan, Muhamad Volkandari, Slamet Diah Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration |
title | Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration |
title_full | Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration |
title_fullStr | Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration |
title_full_unstemmed | Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration |
title_short | Optimization of expression JTAT protein with emphasis on transformation efficiency and IPTG concentration |
title_sort | optimization of expression jtat protein with emphasis on transformation efficiency and iptg concentration |
topic | Others (In silico & Biochemistry) |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6296586/ https://www.ncbi.nlm.nih.gov/pubmed/30647694 http://dx.doi.org/10.1016/j.jgeb.2017.06.009 |
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