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Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA
The emergence of primordial RNA-based life would have required the abiotic synthesis of nucleotides, and their participation in nonenzymatic RNA replication. Although considerable progress has been made toward potentially prebiotic syntheses of the pyrimidine nucleotides (C and U) and their 2-thio v...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
National Academy of Sciences
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6310819/ https://www.ncbi.nlm.nih.gov/pubmed/30509978 http://dx.doi.org/10.1073/pnas.1814367115 |
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author | Kim, Seohyun Chris O’Flaherty, Derek K. Zhou, Lijun Lelyveld, Victor S. Szostak, Jack W. |
author_facet | Kim, Seohyun Chris O’Flaherty, Derek K. Zhou, Lijun Lelyveld, Victor S. Szostak, Jack W. |
author_sort | Kim, Seohyun Chris |
collection | PubMed |
description | The emergence of primordial RNA-based life would have required the abiotic synthesis of nucleotides, and their participation in nonenzymatic RNA replication. Although considerable progress has been made toward potentially prebiotic syntheses of the pyrimidine nucleotides (C and U) and their 2-thio variants, efficient routes to the canonical purine nucleotides (A and G) remain elusive. Reported syntheses are low yielding and generate a large number of undesired side products. Recently, a potentially prebiotic pathway to 8-oxo-adenosine and 8-oxo-inosine has been demonstrated, raising the question of the suitability of the 8-oxo-purines as substrates for prebiotic RNA replication. Here we show that the 8-oxo-purine nucleotides are poor substrates for nonenzymatic RNA primer extension, both as activated monomers and when present in the template strand; their presence at the end of a primer also strongly reduces the rate and fidelity of primer extension. To provide a proper comparison with 8-oxo-inosine, we also examined primer extension reactions with inosine, and found that inosine exhibits surprisingly rapid and accurate nonenzymatic RNA copying. We propose that inosine, which can be derived from adenosine by deamination, could have acted as a surrogate for G in the earliest stages of the emergence of life. |
format | Online Article Text |
id | pubmed-6310819 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | National Academy of Sciences |
record_format | MEDLINE/PubMed |
spelling | pubmed-63108192019-01-04 Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA Kim, Seohyun Chris O’Flaherty, Derek K. Zhou, Lijun Lelyveld, Victor S. Szostak, Jack W. Proc Natl Acad Sci U S A Biological Sciences The emergence of primordial RNA-based life would have required the abiotic synthesis of nucleotides, and their participation in nonenzymatic RNA replication. Although considerable progress has been made toward potentially prebiotic syntheses of the pyrimidine nucleotides (C and U) and their 2-thio variants, efficient routes to the canonical purine nucleotides (A and G) remain elusive. Reported syntheses are low yielding and generate a large number of undesired side products. Recently, a potentially prebiotic pathway to 8-oxo-adenosine and 8-oxo-inosine has been demonstrated, raising the question of the suitability of the 8-oxo-purines as substrates for prebiotic RNA replication. Here we show that the 8-oxo-purine nucleotides are poor substrates for nonenzymatic RNA primer extension, both as activated monomers and when present in the template strand; their presence at the end of a primer also strongly reduces the rate and fidelity of primer extension. To provide a proper comparison with 8-oxo-inosine, we also examined primer extension reactions with inosine, and found that inosine exhibits surprisingly rapid and accurate nonenzymatic RNA copying. We propose that inosine, which can be derived from adenosine by deamination, could have acted as a surrogate for G in the earliest stages of the emergence of life. National Academy of Sciences 2018-12-26 2018-12-03 /pmc/articles/PMC6310819/ /pubmed/30509978 http://dx.doi.org/10.1073/pnas.1814367115 Text en Copyright © 2018 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) . |
spellingShingle | Biological Sciences Kim, Seohyun Chris O’Flaherty, Derek K. Zhou, Lijun Lelyveld, Victor S. Szostak, Jack W. Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA |
title | Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA |
title_full | Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA |
title_fullStr | Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA |
title_full_unstemmed | Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA |
title_short | Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA |
title_sort | inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of rna |
topic | Biological Sciences |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6310819/ https://www.ncbi.nlm.nih.gov/pubmed/30509978 http://dx.doi.org/10.1073/pnas.1814367115 |
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