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Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA

The emergence of primordial RNA-based life would have required the abiotic synthesis of nucleotides, and their participation in nonenzymatic RNA replication. Although considerable progress has been made toward potentially prebiotic syntheses of the pyrimidine nucleotides (C and U) and their 2-thio v...

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Autores principales: Kim, Seohyun Chris, O’Flaherty, Derek K., Zhou, Lijun, Lelyveld, Victor S., Szostak, Jack W.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: National Academy of Sciences 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6310819/
https://www.ncbi.nlm.nih.gov/pubmed/30509978
http://dx.doi.org/10.1073/pnas.1814367115
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author Kim, Seohyun Chris
O’Flaherty, Derek K.
Zhou, Lijun
Lelyveld, Victor S.
Szostak, Jack W.
author_facet Kim, Seohyun Chris
O’Flaherty, Derek K.
Zhou, Lijun
Lelyveld, Victor S.
Szostak, Jack W.
author_sort Kim, Seohyun Chris
collection PubMed
description The emergence of primordial RNA-based life would have required the abiotic synthesis of nucleotides, and their participation in nonenzymatic RNA replication. Although considerable progress has been made toward potentially prebiotic syntheses of the pyrimidine nucleotides (C and U) and their 2-thio variants, efficient routes to the canonical purine nucleotides (A and G) remain elusive. Reported syntheses are low yielding and generate a large number of undesired side products. Recently, a potentially prebiotic pathway to 8-oxo-adenosine and 8-oxo-inosine has been demonstrated, raising the question of the suitability of the 8-oxo-purines as substrates for prebiotic RNA replication. Here we show that the 8-oxo-purine nucleotides are poor substrates for nonenzymatic RNA primer extension, both as activated monomers and when present in the template strand; their presence at the end of a primer also strongly reduces the rate and fidelity of primer extension. To provide a proper comparison with 8-oxo-inosine, we also examined primer extension reactions with inosine, and found that inosine exhibits surprisingly rapid and accurate nonenzymatic RNA copying. We propose that inosine, which can be derived from adenosine by deamination, could have acted as a surrogate for G in the earliest stages of the emergence of life.
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spelling pubmed-63108192019-01-04 Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA Kim, Seohyun Chris O’Flaherty, Derek K. Zhou, Lijun Lelyveld, Victor S. Szostak, Jack W. Proc Natl Acad Sci U S A Biological Sciences The emergence of primordial RNA-based life would have required the abiotic synthesis of nucleotides, and their participation in nonenzymatic RNA replication. Although considerable progress has been made toward potentially prebiotic syntheses of the pyrimidine nucleotides (C and U) and their 2-thio variants, efficient routes to the canonical purine nucleotides (A and G) remain elusive. Reported syntheses are low yielding and generate a large number of undesired side products. Recently, a potentially prebiotic pathway to 8-oxo-adenosine and 8-oxo-inosine has been demonstrated, raising the question of the suitability of the 8-oxo-purines as substrates for prebiotic RNA replication. Here we show that the 8-oxo-purine nucleotides are poor substrates for nonenzymatic RNA primer extension, both as activated monomers and when present in the template strand; their presence at the end of a primer also strongly reduces the rate and fidelity of primer extension. To provide a proper comparison with 8-oxo-inosine, we also examined primer extension reactions with inosine, and found that inosine exhibits surprisingly rapid and accurate nonenzymatic RNA copying. We propose that inosine, which can be derived from adenosine by deamination, could have acted as a surrogate for G in the earliest stages of the emergence of life. National Academy of Sciences 2018-12-26 2018-12-03 /pmc/articles/PMC6310819/ /pubmed/30509978 http://dx.doi.org/10.1073/pnas.1814367115 Text en Copyright © 2018 the Author(s). Published by PNAS. https://creativecommons.org/licenses/by-nc-nd/4.0/ This open access article is distributed under Creative Commons Attribution-NonCommercial-NoDerivatives License 4.0 (CC BY-NC-ND) (https://creativecommons.org/licenses/by-nc-nd/4.0/) .
spellingShingle Biological Sciences
Kim, Seohyun Chris
O’Flaherty, Derek K.
Zhou, Lijun
Lelyveld, Victor S.
Szostak, Jack W.
Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA
title Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA
title_full Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA
title_fullStr Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA
title_full_unstemmed Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA
title_short Inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of RNA
title_sort inosine, but none of the 8-oxo-purines, is a plausible component of a primordial version of rna
topic Biological Sciences
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6310819/
https://www.ncbi.nlm.nih.gov/pubmed/30509978
http://dx.doi.org/10.1073/pnas.1814367115
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