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The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources

The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function,...

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Autores principales: Ruzicka, Leyla, Howe, Douglas G, Ramachandran, Sridhar, Toro, Sabrina, Van Slyke, Ceri E, Bradford, Yvonne M, Eagle, Anne, Fashena, David, Frazer, Ken, Kalita, Patrick, Mani, Prita, Martin, Ryan, Moxon, Sierra Taylor, Paddock, Holly, Pich, Christian, Schaper, Kevin, Shao, Xiang, Singer, Amy, Westerfield, Monte
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323962/
https://www.ncbi.nlm.nih.gov/pubmed/30407545
http://dx.doi.org/10.1093/nar/gky1090
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author Ruzicka, Leyla
Howe, Douglas G
Ramachandran, Sridhar
Toro, Sabrina
Van Slyke, Ceri E
Bradford, Yvonne M
Eagle, Anne
Fashena, David
Frazer, Ken
Kalita, Patrick
Mani, Prita
Martin, Ryan
Moxon, Sierra Taylor
Paddock, Holly
Pich, Christian
Schaper, Kevin
Shao, Xiang
Singer, Amy
Westerfield, Monte
author_facet Ruzicka, Leyla
Howe, Douglas G
Ramachandran, Sridhar
Toro, Sabrina
Van Slyke, Ceri E
Bradford, Yvonne M
Eagle, Anne
Fashena, David
Frazer, Ken
Kalita, Patrick
Mani, Prita
Martin, Ryan
Moxon, Sierra Taylor
Paddock, Holly
Pich, Christian
Schaper, Kevin
Shao, Xiang
Singer, Amy
Westerfield, Monte
author_sort Ruzicka, Leyla
collection PubMed
description The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function, mutant phenotypes, orthology, human disease models, nomenclature and reagents. New features at ZFIN include increased support for genomic regions and for non-coding genes, and support for more expressive Gene Ontology annotations. ZFIN has recently taken over maintenance of the zebrafish reference genome sequence as part of the Genome Reference Consortium. ZFIN is also a founding member of the Alliance of Genome Resources, a collaboration of six model organism databases (MODs) and the Gene Ontology Consortium (GO). The recently launched Alliance portal (https://alliancegenome.org) provides a unified, comparative view of MOD, GO, and human data, and facilitates foundational and translational biomedical research.
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spelling pubmed-63239622019-01-10 The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources Ruzicka, Leyla Howe, Douglas G Ramachandran, Sridhar Toro, Sabrina Van Slyke, Ceri E Bradford, Yvonne M Eagle, Anne Fashena, David Frazer, Ken Kalita, Patrick Mani, Prita Martin, Ryan Moxon, Sierra Taylor Paddock, Holly Pich, Christian Schaper, Kevin Shao, Xiang Singer, Amy Westerfield, Monte Nucleic Acids Res Database Issue The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function, mutant phenotypes, orthology, human disease models, nomenclature and reagents. New features at ZFIN include increased support for genomic regions and for non-coding genes, and support for more expressive Gene Ontology annotations. ZFIN has recently taken over maintenance of the zebrafish reference genome sequence as part of the Genome Reference Consortium. ZFIN is also a founding member of the Alliance of Genome Resources, a collaboration of six model organism databases (MODs) and the Gene Ontology Consortium (GO). The recently launched Alliance portal (https://alliancegenome.org) provides a unified, comparative view of MOD, GO, and human data, and facilitates foundational and translational biomedical research. Oxford University Press 2019-01-08 2018-11-08 /pmc/articles/PMC6323962/ /pubmed/30407545 http://dx.doi.org/10.1093/nar/gky1090 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com
spellingShingle Database Issue
Ruzicka, Leyla
Howe, Douglas G
Ramachandran, Sridhar
Toro, Sabrina
Van Slyke, Ceri E
Bradford, Yvonne M
Eagle, Anne
Fashena, David
Frazer, Ken
Kalita, Patrick
Mani, Prita
Martin, Ryan
Moxon, Sierra Taylor
Paddock, Holly
Pich, Christian
Schaper, Kevin
Shao, Xiang
Singer, Amy
Westerfield, Monte
The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
title The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
title_full The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
title_fullStr The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
title_full_unstemmed The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
title_short The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
title_sort zebrafish information network: new support for non-coding genes, richer gene ontology annotations and the alliance of genome resources
topic Database Issue
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323962/
https://www.ncbi.nlm.nih.gov/pubmed/30407545
http://dx.doi.org/10.1093/nar/gky1090
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