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The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources
The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function,...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323962/ https://www.ncbi.nlm.nih.gov/pubmed/30407545 http://dx.doi.org/10.1093/nar/gky1090 |
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author | Ruzicka, Leyla Howe, Douglas G Ramachandran, Sridhar Toro, Sabrina Van Slyke, Ceri E Bradford, Yvonne M Eagle, Anne Fashena, David Frazer, Ken Kalita, Patrick Mani, Prita Martin, Ryan Moxon, Sierra Taylor Paddock, Holly Pich, Christian Schaper, Kevin Shao, Xiang Singer, Amy Westerfield, Monte |
author_facet | Ruzicka, Leyla Howe, Douglas G Ramachandran, Sridhar Toro, Sabrina Van Slyke, Ceri E Bradford, Yvonne M Eagle, Anne Fashena, David Frazer, Ken Kalita, Patrick Mani, Prita Martin, Ryan Moxon, Sierra Taylor Paddock, Holly Pich, Christian Schaper, Kevin Shao, Xiang Singer, Amy Westerfield, Monte |
author_sort | Ruzicka, Leyla |
collection | PubMed |
description | The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function, mutant phenotypes, orthology, human disease models, nomenclature and reagents. New features at ZFIN include increased support for genomic regions and for non-coding genes, and support for more expressive Gene Ontology annotations. ZFIN has recently taken over maintenance of the zebrafish reference genome sequence as part of the Genome Reference Consortium. ZFIN is also a founding member of the Alliance of Genome Resources, a collaboration of six model organism databases (MODs) and the Gene Ontology Consortium (GO). The recently launched Alliance portal (https://alliancegenome.org) provides a unified, comparative view of MOD, GO, and human data, and facilitates foundational and translational biomedical research. |
format | Online Article Text |
id | pubmed-6323962 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-63239622019-01-10 The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources Ruzicka, Leyla Howe, Douglas G Ramachandran, Sridhar Toro, Sabrina Van Slyke, Ceri E Bradford, Yvonne M Eagle, Anne Fashena, David Frazer, Ken Kalita, Patrick Mani, Prita Martin, Ryan Moxon, Sierra Taylor Paddock, Holly Pich, Christian Schaper, Kevin Shao, Xiang Singer, Amy Westerfield, Monte Nucleic Acids Res Database Issue The Zebrafish Information Network (ZFIN) (https://zfin.org/) is the database for the model organism, zebrafish (Danio rerio). ZFIN expertly curates, organizes and provides a wide array of zebrafish genetic and genomic data, including genes, alleles, transgenic lines, gene expression, gene function, mutant phenotypes, orthology, human disease models, nomenclature and reagents. New features at ZFIN include increased support for genomic regions and for non-coding genes, and support for more expressive Gene Ontology annotations. ZFIN has recently taken over maintenance of the zebrafish reference genome sequence as part of the Genome Reference Consortium. ZFIN is also a founding member of the Alliance of Genome Resources, a collaboration of six model organism databases (MODs) and the Gene Ontology Consortium (GO). The recently launched Alliance portal (https://alliancegenome.org) provides a unified, comparative view of MOD, GO, and human data, and facilitates foundational and translational biomedical research. Oxford University Press 2019-01-08 2018-11-08 /pmc/articles/PMC6323962/ /pubmed/30407545 http://dx.doi.org/10.1093/nar/gky1090 Text en © The Author(s) 2018. Published by Oxford University Press on behalf of Nucleic Acids Research. http://creativecommons.org/licenses/by-nc/4.0/ This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com |
spellingShingle | Database Issue Ruzicka, Leyla Howe, Douglas G Ramachandran, Sridhar Toro, Sabrina Van Slyke, Ceri E Bradford, Yvonne M Eagle, Anne Fashena, David Frazer, Ken Kalita, Patrick Mani, Prita Martin, Ryan Moxon, Sierra Taylor Paddock, Holly Pich, Christian Schaper, Kevin Shao, Xiang Singer, Amy Westerfield, Monte The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources |
title | The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources |
title_full | The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources |
title_fullStr | The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources |
title_full_unstemmed | The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources |
title_short | The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources |
title_sort | zebrafish information network: new support for non-coding genes, richer gene ontology annotations and the alliance of genome resources |
topic | Database Issue |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6323962/ https://www.ncbi.nlm.nih.gov/pubmed/30407545 http://dx.doi.org/10.1093/nar/gky1090 |
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