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pblat: a multithread blat algorithm speeding up aligning sequences to genomes

BACKGROUND: The blat is a widely used sequence alignment tool. It is especially useful for aligning long sequences and gapped mapping, which cannot be performed properly by other fast sequence mappers designed for short reads. However, the blat tool is single threaded and when used to map whole geno...

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Detalles Bibliográficos
Autores principales: Wang, Meng, Kong, Lei
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6334396/
https://www.ncbi.nlm.nih.gov/pubmed/30646844
http://dx.doi.org/10.1186/s12859-019-2597-8