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Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay

Protein kinases play a crucial role in cellular functions by adding phosphate group to the protein substrates. It is an indispensable post-translational modification that regulates intracellular signaling and key cellular processes. They thus serve as an excellent target for chemotherapeutic interve...

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Autores principales: Jain, Ravi, Garg, Swati, Singh, Shailja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Elsevier 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355432/
https://www.ncbi.nlm.nih.gov/pubmed/30733929
http://dx.doi.org/10.1016/j.mex.2018.12.003
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author Jain, Ravi
Garg, Swati
Singh, Shailja
author_facet Jain, Ravi
Garg, Swati
Singh, Shailja
author_sort Jain, Ravi
collection PubMed
description Protein kinases play a crucial role in cellular functions by adding phosphate group to the protein substrates. It is an indispensable post-translational modification that regulates intracellular signaling and key cellular processes. They thus serve as an excellent target for chemotherapeutic interventions. A vast repertoire of protein kinases is present in a cell with diverse substrates as well as phosphorylation sites. To study full kinome for its activity, there is an urgent need of designing a comprehensive, in vitro assay which itself is an impractical task. However, in this study, we have attempted to develop a robust assay that not only mimics the in vivo nature of the kinases but can also be used in a high throughput drug-screening platform. Herein, the Leishmania donovani parasites are lysed and the total protein content is extracted. This extracted proteome is further sub divided into two parts: one active fraction containing cellular kinases and the substrate is heat-denatured fraction that loses all the enzymatic activity but retains the potential phosphorylation sites. These fractions are then co-incubated in the presence of ATP to initiate the kinase reaction and the total kinase activity is measured using ADP-glo kinase assay. Overall, this method • Presents a simple and robust approach to understand the participation of kinases in signaling networks. • Presents a high-throughput platform for ex-vivo drug screening.
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spelling pubmed-63554322019-02-07 Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay Jain, Ravi Garg, Swati Singh, Shailja MethodsX Biochemistry, Genetics and Molecular Biology Protein kinases play a crucial role in cellular functions by adding phosphate group to the protein substrates. It is an indispensable post-translational modification that regulates intracellular signaling and key cellular processes. They thus serve as an excellent target for chemotherapeutic interventions. A vast repertoire of protein kinases is present in a cell with diverse substrates as well as phosphorylation sites. To study full kinome for its activity, there is an urgent need of designing a comprehensive, in vitro assay which itself is an impractical task. However, in this study, we have attempted to develop a robust assay that not only mimics the in vivo nature of the kinases but can also be used in a high throughput drug-screening platform. Herein, the Leishmania donovani parasites are lysed and the total protein content is extracted. This extracted proteome is further sub divided into two parts: one active fraction containing cellular kinases and the substrate is heat-denatured fraction that loses all the enzymatic activity but retains the potential phosphorylation sites. These fractions are then co-incubated in the presence of ATP to initiate the kinase reaction and the total kinase activity is measured using ADP-glo kinase assay. Overall, this method • Presents a simple and robust approach to understand the participation of kinases in signaling networks. • Presents a high-throughput platform for ex-vivo drug screening. Elsevier 2019-01-18 /pmc/articles/PMC6355432/ /pubmed/30733929 http://dx.doi.org/10.1016/j.mex.2018.12.003 Text en © 2018 Published by Elsevier B.V. http://creativecommons.org/licenses/by-nc-nd/4.0/ This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).
spellingShingle Biochemistry, Genetics and Molecular Biology
Jain, Ravi
Garg, Swati
Singh, Shailja
Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay
title Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay
title_full Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay
title_fullStr Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay
title_full_unstemmed Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay
title_short Screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay
title_sort screening of chemical library against whole cell kinome activity via non-radioactive, high throughput kinase assay
topic Biochemistry, Genetics and Molecular Biology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6355432/
https://www.ncbi.nlm.nih.gov/pubmed/30733929
http://dx.doi.org/10.1016/j.mex.2018.12.003
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