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Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives
When an N-base approaches the tetrel atom of TF(4) (T = Si, Ge, Sn) the latter molecule deforms from a tetrahedral structure in the monomer to a trigonal bipyramid. The base can situate itself at either an axial or equatorial position, leading to two different equilibrium geometries. The interaction...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359171/ https://www.ncbi.nlm.nih.gov/pubmed/30669688 http://dx.doi.org/10.3390/molecules24020376 |
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author | Zierkiewicz, Wiktor Michalczyk, Mariusz Wysokiński, Rafał Scheiner, Steve |
author_facet | Zierkiewicz, Wiktor Michalczyk, Mariusz Wysokiński, Rafał Scheiner, Steve |
author_sort | Zierkiewicz, Wiktor |
collection | PubMed |
description | When an N-base approaches the tetrel atom of TF(4) (T = Si, Ge, Sn) the latter molecule deforms from a tetrahedral structure in the monomer to a trigonal bipyramid. The base can situate itself at either an axial or equatorial position, leading to two different equilibrium geometries. The interaction energies are considerably larger for the equatorial structures, up around 50 kcal/mol, which also have a shorter R(T··N) separation. On the other hand, the energy needed to deform the tetrahedral monomer into the equatorial structure is much higher than the equivalent deformation energy in the axial dimer. When these two opposite trends are combined, it is the axial geometry which is somewhat more stable than the equatorial, yielding binding energies in the 8–34 kcal/mol range. There is a clear trend of increasing interaction energy as the tetrel atom grows larger: Si < Ge < Sn, a pattern which is accentuated for the binding energies. |
format | Online Article Text |
id | pubmed-6359171 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-63591712019-02-06 Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives Zierkiewicz, Wiktor Michalczyk, Mariusz Wysokiński, Rafał Scheiner, Steve Molecules Article When an N-base approaches the tetrel atom of TF(4) (T = Si, Ge, Sn) the latter molecule deforms from a tetrahedral structure in the monomer to a trigonal bipyramid. The base can situate itself at either an axial or equatorial position, leading to two different equilibrium geometries. The interaction energies are considerably larger for the equatorial structures, up around 50 kcal/mol, which also have a shorter R(T··N) separation. On the other hand, the energy needed to deform the tetrahedral monomer into the equatorial structure is much higher than the equivalent deformation energy in the axial dimer. When these two opposite trends are combined, it is the axial geometry which is somewhat more stable than the equatorial, yielding binding energies in the 8–34 kcal/mol range. There is a clear trend of increasing interaction energy as the tetrel atom grows larger: Si < Ge < Sn, a pattern which is accentuated for the binding energies. MDPI 2019-01-21 /pmc/articles/PMC6359171/ /pubmed/30669688 http://dx.doi.org/10.3390/molecules24020376 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Article Zierkiewicz, Wiktor Michalczyk, Mariusz Wysokiński, Rafał Scheiner, Steve Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives |
title | Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives |
title_full | Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives |
title_fullStr | Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives |
title_full_unstemmed | Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives |
title_short | Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives |
title_sort | dual geometry schemes in tetrel bonds: complexes between tf(4) (t = si, ge, sn) and pyridine derivatives |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359171/ https://www.ncbi.nlm.nih.gov/pubmed/30669688 http://dx.doi.org/10.3390/molecules24020376 |
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