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Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives

When an N-base approaches the tetrel atom of TF(4) (T = Si, Ge, Sn) the latter molecule deforms from a tetrahedral structure in the monomer to a trigonal bipyramid. The base can situate itself at either an axial or equatorial position, leading to two different equilibrium geometries. The interaction...

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Autores principales: Zierkiewicz, Wiktor, Michalczyk, Mariusz, Wysokiński, Rafał, Scheiner, Steve
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359171/
https://www.ncbi.nlm.nih.gov/pubmed/30669688
http://dx.doi.org/10.3390/molecules24020376
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author Zierkiewicz, Wiktor
Michalczyk, Mariusz
Wysokiński, Rafał
Scheiner, Steve
author_facet Zierkiewicz, Wiktor
Michalczyk, Mariusz
Wysokiński, Rafał
Scheiner, Steve
author_sort Zierkiewicz, Wiktor
collection PubMed
description When an N-base approaches the tetrel atom of TF(4) (T = Si, Ge, Sn) the latter molecule deforms from a tetrahedral structure in the monomer to a trigonal bipyramid. The base can situate itself at either an axial or equatorial position, leading to two different equilibrium geometries. The interaction energies are considerably larger for the equatorial structures, up around 50 kcal/mol, which also have a shorter R(T··N) separation. On the other hand, the energy needed to deform the tetrahedral monomer into the equatorial structure is much higher than the equivalent deformation energy in the axial dimer. When these two opposite trends are combined, it is the axial geometry which is somewhat more stable than the equatorial, yielding binding energies in the 8–34 kcal/mol range. There is a clear trend of increasing interaction energy as the tetrel atom grows larger: Si < Ge < Sn, a pattern which is accentuated for the binding energies.
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spelling pubmed-63591712019-02-06 Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives Zierkiewicz, Wiktor Michalczyk, Mariusz Wysokiński, Rafał Scheiner, Steve Molecules Article When an N-base approaches the tetrel atom of TF(4) (T = Si, Ge, Sn) the latter molecule deforms from a tetrahedral structure in the monomer to a trigonal bipyramid. The base can situate itself at either an axial or equatorial position, leading to two different equilibrium geometries. The interaction energies are considerably larger for the equatorial structures, up around 50 kcal/mol, which also have a shorter R(T··N) separation. On the other hand, the energy needed to deform the tetrahedral monomer into the equatorial structure is much higher than the equivalent deformation energy in the axial dimer. When these two opposite trends are combined, it is the axial geometry which is somewhat more stable than the equatorial, yielding binding energies in the 8–34 kcal/mol range. There is a clear trend of increasing interaction energy as the tetrel atom grows larger: Si < Ge < Sn, a pattern which is accentuated for the binding energies. MDPI 2019-01-21 /pmc/articles/PMC6359171/ /pubmed/30669688 http://dx.doi.org/10.3390/molecules24020376 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
Zierkiewicz, Wiktor
Michalczyk, Mariusz
Wysokiński, Rafał
Scheiner, Steve
Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives
title Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives
title_full Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives
title_fullStr Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives
title_full_unstemmed Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives
title_short Dual Geometry Schemes in Tetrel Bonds: Complexes between TF(4) (T = Si, Ge, Sn) and Pyridine Derivatives
title_sort dual geometry schemes in tetrel bonds: complexes between tf(4) (t = si, ge, sn) and pyridine derivatives
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6359171/
https://www.ncbi.nlm.nih.gov/pubmed/30669688
http://dx.doi.org/10.3390/molecules24020376
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