Cargando…
elPrep 4: A multithreaded framework for sequence analysis
We present elPrep 4, a reimplementation from scratch of the elPrep framework for processing sequence alignment map files in the Go programming language. elPrep 4 includes multiple new features allowing us to process all of the preparation steps defined by the GATK Best Practice pipelines for variant...
Autores principales: | Herzeel, Charlotte, Costanza, Pascal, Decap, Dries, Fostier, Jan, Verachtert, Wilfried |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6373927/ https://www.ncbi.nlm.nih.gov/pubmed/30759172 http://dx.doi.org/10.1371/journal.pone.0209523 |
Ejemplares similares
-
Multithreaded variant calling in elPrep 5
por: Herzeel, Charlotte, et al.
Publicado: (2021) -
elPrep: High-Performance Preparation of Sequence Alignment/Map Files for Variant Calling
por: Herzeel, Charlotte, et al.
Publicado: (2015) -
Halvade: scalable sequence analysis with MapReduce
por: Decap, Dries, et al.
Publicado: (2015) -
Halvade-RNA: Parallel variant calling from transcriptomic data using MapReduce
por: Decap, Dries, et al.
Publicado: (2017) -
Comparing Ease of Programming in C++, Go, and Java for Implementing a
Next-Generation Sequencing Tool
por: Costanza, Pascal, et al.
Publicado: (2019)