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Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases?

Unconstrained amides that undergo fast hydrolysis under mild conditions are valuable sources of information about how amide bonds may be activated in enzymatic transformations. We report a compound possessing an unconstrained amide bond surrounded by an amino and a carboxyl group, each mounted in cl...

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Autores principales: V. Komarov, Igor, Yu. Ishchenko, Aleksandr, Hovtvianitsa, Aleksandr, Stepanenko, Viacheslav, Kharchenko, Serhii, D. Bond, Andrew, J. Kirby, Anthony
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6384577/
https://www.ncbi.nlm.nih.gov/pubmed/30764512
http://dx.doi.org/10.3390/molecules24030572
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author V. Komarov, Igor
Yu. Ishchenko, Aleksandr
Hovtvianitsa, Aleksandr
Stepanenko, Viacheslav
Kharchenko, Serhii
D. Bond, Andrew
J. Kirby, Anthony
author_facet V. Komarov, Igor
Yu. Ishchenko, Aleksandr
Hovtvianitsa, Aleksandr
Stepanenko, Viacheslav
Kharchenko, Serhii
D. Bond, Andrew
J. Kirby, Anthony
author_sort V. Komarov, Igor
collection PubMed
description Unconstrained amides that undergo fast hydrolysis under mild conditions are valuable sources of information about how amide bonds may be activated in enzymatic transformations. We report a compound possessing an unconstrained amide bond surrounded by an amino and a carboxyl group, each mounted in close proximity on a bicyclic scaffold. Fast amide hydrolysis of this model compound was found to depend on the presence of both the amino and carboxyl functions, and to involve a proton transfer in the rate-limiting step. Possible mechanisms for the hydrolytic cleavage and their relevance to peptide bond cleavage catalyzed by natural enzymes are discussed. Experimental observations suggest that the most probable mechanisms of the model compound hydrolysis might include a twisted amide intermediate and a rate-determining proton transfer.
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spelling pubmed-63845772019-02-23 Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases? V. Komarov, Igor Yu. Ishchenko, Aleksandr Hovtvianitsa, Aleksandr Stepanenko, Viacheslav Kharchenko, Serhii D. Bond, Andrew J. Kirby, Anthony Molecules Article Unconstrained amides that undergo fast hydrolysis under mild conditions are valuable sources of information about how amide bonds may be activated in enzymatic transformations. We report a compound possessing an unconstrained amide bond surrounded by an amino and a carboxyl group, each mounted in close proximity on a bicyclic scaffold. Fast amide hydrolysis of this model compound was found to depend on the presence of both the amino and carboxyl functions, and to involve a proton transfer in the rate-limiting step. Possible mechanisms for the hydrolytic cleavage and their relevance to peptide bond cleavage catalyzed by natural enzymes are discussed. Experimental observations suggest that the most probable mechanisms of the model compound hydrolysis might include a twisted amide intermediate and a rate-determining proton transfer. MDPI 2019-02-05 /pmc/articles/PMC6384577/ /pubmed/30764512 http://dx.doi.org/10.3390/molecules24030572 Text en © 2019 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Article
V. Komarov, Igor
Yu. Ishchenko, Aleksandr
Hovtvianitsa, Aleksandr
Stepanenko, Viacheslav
Kharchenko, Serhii
D. Bond, Andrew
J. Kirby, Anthony
Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases?
title Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases?
title_full Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases?
title_fullStr Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases?
title_full_unstemmed Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases?
title_short Fast Amide Bond Cleavage Assisted by a Secondary Amino and a Carboxyl Group—A Model for yet Unknown Peptidases?
title_sort fast amide bond cleavage assisted by a secondary amino and a carboxyl group—a model for yet unknown peptidases?
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6384577/
https://www.ncbi.nlm.nih.gov/pubmed/30764512
http://dx.doi.org/10.3390/molecules24030572
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