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Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements

Hydration properties of folded and unfolded/disordered miniproteins were monitored in frozen solutions by wide-line (1)H-NMR. The amount of mobile water as function of T (−80 °C < T < 0 °C) was found characteristically different for folded (TC5b), semi-folded (pH < 3, TCb5(H+)) and disorder...

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Autores principales: Taricska, Nóra, Bokor, Mónika, Menyhárd, Dóra K., Tompa, Kálmán, Perczel, András
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
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Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393587/
https://www.ncbi.nlm.nih.gov/pubmed/30814556
http://dx.doi.org/10.1038/s41598-019-39121-5
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author Taricska, Nóra
Bokor, Mónika
Menyhárd, Dóra K.
Tompa, Kálmán
Perczel, András
author_facet Taricska, Nóra
Bokor, Mónika
Menyhárd, Dóra K.
Tompa, Kálmán
Perczel, András
author_sort Taricska, Nóra
collection PubMed
description Hydration properties of folded and unfolded/disordered miniproteins were monitored in frozen solutions by wide-line (1)H-NMR. The amount of mobile water as function of T (−80 °C < T < 0 °C) was found characteristically different for folded (TC5b), semi-folded (pH < 3, TCb5(H+)) and disordered (TC5b_N1R) variants. Comparing results of wide-line (1)H-NMR and molecular dynamics simulations we found that both the amount of mobile water surrounding proteins in ice, as well as their thaw profiles differs significantly as function of the compactness and conformational heterogeneity of their structure. We found that (i) at around −50 °C ~50 H(2)Os/protein melt (ii) if the protein is well-folded then this amount of mobile water remains quasi-constant up to −20 °C, (iii) if disordered then the quantity of the lubricating mobile water increases with T in a constant manner up to ~200 H(2)Os/protein by reaching −20 °C. Especially in the −55 °C ↔ −15 °C temperature range, wide-line (1)H-NMR detects the heterogeneity of protein fold, providing the size of the hydration shell surrounding the accessible conformers at a given temperature. Results indicate that freezing of protein solutions proceeds by the gradual selection of the enthalpically most favored states that also minimize the number of bridging waters.
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spelling pubmed-63935872019-03-01 Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements Taricska, Nóra Bokor, Mónika Menyhárd, Dóra K. Tompa, Kálmán Perczel, András Sci Rep Article Hydration properties of folded and unfolded/disordered miniproteins were monitored in frozen solutions by wide-line (1)H-NMR. The amount of mobile water as function of T (−80 °C < T < 0 °C) was found characteristically different for folded (TC5b), semi-folded (pH < 3, TCb5(H+)) and disordered (TC5b_N1R) variants. Comparing results of wide-line (1)H-NMR and molecular dynamics simulations we found that both the amount of mobile water surrounding proteins in ice, as well as their thaw profiles differs significantly as function of the compactness and conformational heterogeneity of their structure. We found that (i) at around −50 °C ~50 H(2)Os/protein melt (ii) if the protein is well-folded then this amount of mobile water remains quasi-constant up to −20 °C, (iii) if disordered then the quantity of the lubricating mobile water increases with T in a constant manner up to ~200 H(2)Os/protein by reaching −20 °C. Especially in the −55 °C ↔ −15 °C temperature range, wide-line (1)H-NMR detects the heterogeneity of protein fold, providing the size of the hydration shell surrounding the accessible conformers at a given temperature. Results indicate that freezing of protein solutions proceeds by the gradual selection of the enthalpically most favored states that also minimize the number of bridging waters. Nature Publishing Group UK 2019-02-27 /pmc/articles/PMC6393587/ /pubmed/30814556 http://dx.doi.org/10.1038/s41598-019-39121-5 Text en © The Author(s) 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Taricska, Nóra
Bokor, Mónika
Menyhárd, Dóra K.
Tompa, Kálmán
Perczel, András
Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements
title Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements
title_full Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements
title_fullStr Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements
title_full_unstemmed Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements
title_short Hydration shell differentiates folded and disordered states of a Trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line NMR measurements
title_sort hydration shell differentiates folded and disordered states of a trp-cage miniprotein, allowing characterization of structural heterogeneity by wide-line nmr measurements
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6393587/
https://www.ncbi.nlm.nih.gov/pubmed/30814556
http://dx.doi.org/10.1038/s41598-019-39121-5
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