Probabilistic variable-length segmentation of protein sequences for discriminative motif discovery (DiMotif) and sequence embedding (ProtVecX)

In this paper, we present peptide-pair encoding (PPE), a general-purpose probabilistic segmentation of protein sequences into commonly occurring variable-length sub-sequences. The idea of PPE segmentation is inspired by the byte-pair encoding (BPE) text compression algorithm, which has recently gain...

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Detalles Bibliográficos
Autores principales: Asgari, Ehsaneddin, McHardy, Alice C., Mofrad, Mohammad R. K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Article
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6401088/
https://www.ncbi.nlm.nih.gov/pubmed/30837494
http://dx.doi.org/10.1038/s41598-019-38746-w

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6401088/
https://www.ncbi.nlm.nih.gov/pubmed/30837494
http://dx.doi.org/10.1038/s41598-019-38746-w

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