External memory BWT and LCP computation for sequence collections with applications

BACKGROUND: Sequencing technologies produce larger and larger collections of biosequences that have to be stored in compressed indices supporting fast search operations. Many compressed indices are based on the Burrows–Wheeler Transform (BWT) and the longest common prefix (LCP) array. Because of the...

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Detalles Bibliográficos
Autores principales: Egidi, Lavinia, Louza, Felipe A., Manzini, Giovanni, Telles, Guilherme P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2019
Materias:
Research
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408864/
https://www.ncbi.nlm.nih.gov/pubmed/30899322
http://dx.doi.org/10.1186/s13015-019-0140-0

Internet

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6408864/
https://www.ncbi.nlm.nih.gov/pubmed/30899322
http://dx.doi.org/10.1186/s13015-019-0140-0

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