Cargando…

Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2)

We report the crystal structure of Ba(CN(3)H(4))(2) as synthesized from liquid ammonia. Structure solution based on X‐ray diffraction data suffers from a severe pseudo‐tetragonal problem due to extreme scattering contrast, so the true monoclinic symmetry is detectable only from neutron powder diffra...

Descripción completa

Detalles Bibliográficos
Autores principales: Benz, Sebastian, Missong, Ronja, Ogutu, George, Stoffel, Ralf P., Englert, Ulli, Torii, Shuki, Miao, Ping, Kamiyama, Takashi, Dronskowski, Richard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: John Wiley and Sons Inc. 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417364/
https://www.ncbi.nlm.nih.gov/pubmed/30915268
http://dx.doi.org/10.1002/open.201900068
_version_ 1783403557902352384
author Benz, Sebastian
Missong, Ronja
Ogutu, George
Stoffel, Ralf P.
Englert, Ulli
Torii, Shuki
Miao, Ping
Kamiyama, Takashi
Dronskowski, Richard
author_facet Benz, Sebastian
Missong, Ronja
Ogutu, George
Stoffel, Ralf P.
Englert, Ulli
Torii, Shuki
Miao, Ping
Kamiyama, Takashi
Dronskowski, Richard
author_sort Benz, Sebastian
collection PubMed
description We report the crystal structure of Ba(CN(3)H(4))(2) as synthesized from liquid ammonia. Structure solution based on X‐ray diffraction data suffers from a severe pseudo‐tetragonal problem due to extreme scattering contrast, so the true monoclinic symmetry is detectable only from neutron powder diffraction patterns, and structure solution and refinement was greatly aided by density‐functional theory. The symmetry lowering is due to slight deviations of the guanidinate anion from the mirror plane in space group P [Formula: see text] b2, a necessity of hydrogen bonding. At 300 K, barium guanidinate crystallizes in P2(1)/c with a=6.26439(2) Å, b=16.58527(5) Å, c=6.25960(2) Å, and a monoclinic angle of β=90.000(1)°. To improve the data‐to‐parameter ratio, anisotropic displacement parameters from first‐principles theory were incorporated in the neutron refinement. Given the correct structural model, the positional parameters of the heavy atoms were also refinable from X‐ray diffraction of a twinned crystal. The two independent guanidinate anions adopt the all‐trans‐ and the anti‐shape. The Ba cation is coordinated by eight imino nitrogens in a square antiprism with Ba−N contacts between 2.81 and 3.04 Å. The IR and Raman spectra of barium guanidinate were compared with DFT‐calculated phonon spectra to identify the vibrational modes.
format Online
Article
Text
id pubmed-6417364
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher John Wiley and Sons Inc.
record_format MEDLINE/PubMed
spelling pubmed-64173642019-03-26 Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2) Benz, Sebastian Missong, Ronja Ogutu, George Stoffel, Ralf P. Englert, Ulli Torii, Shuki Miao, Ping Kamiyama, Takashi Dronskowski, Richard ChemistryOpen Full Papers We report the crystal structure of Ba(CN(3)H(4))(2) as synthesized from liquid ammonia. Structure solution based on X‐ray diffraction data suffers from a severe pseudo‐tetragonal problem due to extreme scattering contrast, so the true monoclinic symmetry is detectable only from neutron powder diffraction patterns, and structure solution and refinement was greatly aided by density‐functional theory. The symmetry lowering is due to slight deviations of the guanidinate anion from the mirror plane in space group P [Formula: see text] b2, a necessity of hydrogen bonding. At 300 K, barium guanidinate crystallizes in P2(1)/c with a=6.26439(2) Å, b=16.58527(5) Å, c=6.25960(2) Å, and a monoclinic angle of β=90.000(1)°. To improve the data‐to‐parameter ratio, anisotropic displacement parameters from first‐principles theory were incorporated in the neutron refinement. Given the correct structural model, the positional parameters of the heavy atoms were also refinable from X‐ray diffraction of a twinned crystal. The two independent guanidinate anions adopt the all‐trans‐ and the anti‐shape. The Ba cation is coordinated by eight imino nitrogens in a square antiprism with Ba−N contacts between 2.81 and 3.04 Å. The IR and Raman spectra of barium guanidinate were compared with DFT‐calculated phonon spectra to identify the vibrational modes. John Wiley and Sons Inc. 2019-03-14 /pmc/articles/PMC6417364/ /pubmed/30915268 http://dx.doi.org/10.1002/open.201900068 Text en © 2019 The Authors. Published by Wiley-VCH Verlag GmbH & Co. KGaA. This is an open access article under the terms of the http://creativecommons.org/licenses/by-nc-nd/4.0/ License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.
spellingShingle Full Papers
Benz, Sebastian
Missong, Ronja
Ogutu, George
Stoffel, Ralf P.
Englert, Ulli
Torii, Shuki
Miao, Ping
Kamiyama, Takashi
Dronskowski, Richard
Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2)
title Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2)
title_full Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2)
title_fullStr Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2)
title_full_unstemmed Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2)
title_short Ammonothermal Synthesis, X‐Ray and Time‐of‐Flight Neutron Crystal‐Structure Determination, and Vibrational Properties of Barium Guanidinate, Ba(CN(3)H(4))(2)
title_sort ammonothermal synthesis, x‐ray and time‐of‐flight neutron crystal‐structure determination, and vibrational properties of barium guanidinate, ba(cn(3)h(4))(2)
topic Full Papers
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6417364/
https://www.ncbi.nlm.nih.gov/pubmed/30915268
http://dx.doi.org/10.1002/open.201900068
work_keys_str_mv AT benzsebastian ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT missongronja ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT ogutugeorge ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT stoffelralfp ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT englertulli ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT toriishuki ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT miaoping ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT kamiyamatakashi ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42
AT dronskowskirichard ammonothermalsynthesisxrayandtimeofflightneutroncrystalstructuredeterminationandvibrationalpropertiesofbariumguanidinatebacn3h42