Cargando…

Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations

Individual instances of cancer are primarily a result of a combination of a small number of genetic mutations (hits). Knowing the number of such mutations is a prerequisite for identifying specific combinations of carcinogenic mutations and understanding the etiology of cancer. We present a mathemat...

Descripción completa

Detalles Bibliográficos
Autores principales: Anandakrishnan, Ramu, Varghese, Robin T., Kinney, Nicholas A., Garner, Harold R.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424461/
https://www.ncbi.nlm.nih.gov/pubmed/30845172
http://dx.doi.org/10.1371/journal.pcbi.1006881
_version_ 1783404687186198528
author Anandakrishnan, Ramu
Varghese, Robin T.
Kinney, Nicholas A.
Garner, Harold R.
author_facet Anandakrishnan, Ramu
Varghese, Robin T.
Kinney, Nicholas A.
Garner, Harold R.
author_sort Anandakrishnan, Ramu
collection PubMed
description Individual instances of cancer are primarily a result of a combination of a small number of genetic mutations (hits). Knowing the number of such mutations is a prerequisite for identifying specific combinations of carcinogenic mutations and understanding the etiology of cancer. We present a mathematical model for estimating the number of hits based on the distribution of somatic mutations. The model is fundamentally different from previous approaches, which are based on cancer incidence by age. Our somatic mutation based model is likely to be more robust than age-based models since it does not require knowing or accounting for the highly variable mutation rate, which can vary by over three orders of magnitude. In fact, we find that the number of somatic mutations at diagnosis is weakly correlated with age at cancer diagnosis, most likely due to the extreme variability in mutation rates between individuals. Comparing the distribution of somatic mutations predicted by our model to the actual distribution from 6904 tumor samples we estimate the number of hits required for carcinogenesis for 17 cancer types. We find that different cancer types exhibit distinct somatic mutational profiles corresponding to different numbers of hits. Why might different cancer types require different numbers of hits for carcinogenesis? The answer may provide insight into the unique etiology of different cancer types.
format Online
Article
Text
id pubmed-6424461
institution National Center for Biotechnology Information
language English
publishDate 2019
publisher Public Library of Science
record_format MEDLINE/PubMed
spelling pubmed-64244612019-04-01 Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations Anandakrishnan, Ramu Varghese, Robin T. Kinney, Nicholas A. Garner, Harold R. PLoS Comput Biol Research Article Individual instances of cancer are primarily a result of a combination of a small number of genetic mutations (hits). Knowing the number of such mutations is a prerequisite for identifying specific combinations of carcinogenic mutations and understanding the etiology of cancer. We present a mathematical model for estimating the number of hits based on the distribution of somatic mutations. The model is fundamentally different from previous approaches, which are based on cancer incidence by age. Our somatic mutation based model is likely to be more robust than age-based models since it does not require knowing or accounting for the highly variable mutation rate, which can vary by over three orders of magnitude. In fact, we find that the number of somatic mutations at diagnosis is weakly correlated with age at cancer diagnosis, most likely due to the extreme variability in mutation rates between individuals. Comparing the distribution of somatic mutations predicted by our model to the actual distribution from 6904 tumor samples we estimate the number of hits required for carcinogenesis for 17 cancer types. We find that different cancer types exhibit distinct somatic mutational profiles corresponding to different numbers of hits. Why might different cancer types require different numbers of hits for carcinogenesis? The answer may provide insight into the unique etiology of different cancer types. Public Library of Science 2019-03-07 /pmc/articles/PMC6424461/ /pubmed/30845172 http://dx.doi.org/10.1371/journal.pcbi.1006881 Text en © 2019 Anandakrishnan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
spellingShingle Research Article
Anandakrishnan, Ramu
Varghese, Robin T.
Kinney, Nicholas A.
Garner, Harold R.
Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
title Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
title_full Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
title_fullStr Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
title_full_unstemmed Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
title_short Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
title_sort estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424461/
https://www.ncbi.nlm.nih.gov/pubmed/30845172
http://dx.doi.org/10.1371/journal.pcbi.1006881
work_keys_str_mv AT anandakrishnanramu estimatingthenumberofgeneticmutationshitsrequiredforcarcinogenesisbasedonthedistributionofsomaticmutations
AT vargheserobint estimatingthenumberofgeneticmutationshitsrequiredforcarcinogenesisbasedonthedistributionofsomaticmutations
AT kinneynicholasa estimatingthenumberofgeneticmutationshitsrequiredforcarcinogenesisbasedonthedistributionofsomaticmutations
AT garnerharoldr estimatingthenumberofgeneticmutationshitsrequiredforcarcinogenesisbasedonthedistributionofsomaticmutations