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Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations
Individual instances of cancer are primarily a result of a combination of a small number of genetic mutations (hits). Knowing the number of such mutations is a prerequisite for identifying specific combinations of carcinogenic mutations and understanding the etiology of cancer. We present a mathemat...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2019
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424461/ https://www.ncbi.nlm.nih.gov/pubmed/30845172 http://dx.doi.org/10.1371/journal.pcbi.1006881 |
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author | Anandakrishnan, Ramu Varghese, Robin T. Kinney, Nicholas A. Garner, Harold R. |
author_facet | Anandakrishnan, Ramu Varghese, Robin T. Kinney, Nicholas A. Garner, Harold R. |
author_sort | Anandakrishnan, Ramu |
collection | PubMed |
description | Individual instances of cancer are primarily a result of a combination of a small number of genetic mutations (hits). Knowing the number of such mutations is a prerequisite for identifying specific combinations of carcinogenic mutations and understanding the etiology of cancer. We present a mathematical model for estimating the number of hits based on the distribution of somatic mutations. The model is fundamentally different from previous approaches, which are based on cancer incidence by age. Our somatic mutation based model is likely to be more robust than age-based models since it does not require knowing or accounting for the highly variable mutation rate, which can vary by over three orders of magnitude. In fact, we find that the number of somatic mutations at diagnosis is weakly correlated with age at cancer diagnosis, most likely due to the extreme variability in mutation rates between individuals. Comparing the distribution of somatic mutations predicted by our model to the actual distribution from 6904 tumor samples we estimate the number of hits required for carcinogenesis for 17 cancer types. We find that different cancer types exhibit distinct somatic mutational profiles corresponding to different numbers of hits. Why might different cancer types require different numbers of hits for carcinogenesis? The answer may provide insight into the unique etiology of different cancer types. |
format | Online Article Text |
id | pubmed-6424461 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2019 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-64244612019-04-01 Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations Anandakrishnan, Ramu Varghese, Robin T. Kinney, Nicholas A. Garner, Harold R. PLoS Comput Biol Research Article Individual instances of cancer are primarily a result of a combination of a small number of genetic mutations (hits). Knowing the number of such mutations is a prerequisite for identifying specific combinations of carcinogenic mutations and understanding the etiology of cancer. We present a mathematical model for estimating the number of hits based on the distribution of somatic mutations. The model is fundamentally different from previous approaches, which are based on cancer incidence by age. Our somatic mutation based model is likely to be more robust than age-based models since it does not require knowing or accounting for the highly variable mutation rate, which can vary by over three orders of magnitude. In fact, we find that the number of somatic mutations at diagnosis is weakly correlated with age at cancer diagnosis, most likely due to the extreme variability in mutation rates between individuals. Comparing the distribution of somatic mutations predicted by our model to the actual distribution from 6904 tumor samples we estimate the number of hits required for carcinogenesis for 17 cancer types. We find that different cancer types exhibit distinct somatic mutational profiles corresponding to different numbers of hits. Why might different cancer types require different numbers of hits for carcinogenesis? The answer may provide insight into the unique etiology of different cancer types. Public Library of Science 2019-03-07 /pmc/articles/PMC6424461/ /pubmed/30845172 http://dx.doi.org/10.1371/journal.pcbi.1006881 Text en © 2019 Anandakrishnan et al http://creativecommons.org/licenses/by/4.0/ This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0/) , which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited. |
spellingShingle | Research Article Anandakrishnan, Ramu Varghese, Robin T. Kinney, Nicholas A. Garner, Harold R. Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations |
title | Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations |
title_full | Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations |
title_fullStr | Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations |
title_full_unstemmed | Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations |
title_short | Estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations |
title_sort | estimating the number of genetic mutations (hits) required for carcinogenesis based on the distribution of somatic mutations |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6424461/ https://www.ncbi.nlm.nih.gov/pubmed/30845172 http://dx.doi.org/10.1371/journal.pcbi.1006881 |
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