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GPU accelerated sequence alignment with traceback for GATK HaplotypeCaller
BACKGROUND: Pairwise sequence alignment is widely used in many biological tools and applications. Existing GPU accelerated implementations mainly focus on calculating optimal alignment score and omit identifying the optimal alignment itself. In GATK HaplotypeCaller (HC), the semi-global pairwise seq...
| Autores principales: | , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
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BioMed Central
2019
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6456962/ https://www.ncbi.nlm.nih.gov/pubmed/30967111 http://dx.doi.org/10.1186/s12864-019-5468-9 |