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Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy

Side chains cover protein surfaces and are fundamental to processes as diverse as substrate recognition, protein folding and enzyme catalysis. However, characterisation of side-chain motions has so far been restricted to small proteins and methyl-bearing side chains. Here we present a class of metho...

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Autores principales: Pritchard, Ruth B., Hansen, D. Flemming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Nature Publishing Group UK 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6465260/
https://www.ncbi.nlm.nih.gov/pubmed/30988305
http://dx.doi.org/10.1038/s41467-019-09743-4
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author Pritchard, Ruth B.
Hansen, D. Flemming
author_facet Pritchard, Ruth B.
Hansen, D. Flemming
author_sort Pritchard, Ruth B.
collection PubMed
description Side chains cover protein surfaces and are fundamental to processes as diverse as substrate recognition, protein folding and enzyme catalysis. However, characterisation of side-chain motions has so far been restricted to small proteins and methyl-bearing side chains. Here we present a class of methods, based on (13)C-detected NMR spectroscopy, to more generally quantify motions and interactions of side chains in medium-to-large proteins. A single, uniformly isotopically labelled sample is sufficient to characterise the side chains of six different amino acid types. Side-chain conformational dynamics on the millisecond time-scale can be quantified by incorporating chemical exchange saturation transfer (CEST) into the presented methods, whilst long-range (13)C-(13)C scalar couplings reporting on nanosecond to millisecond motions can be quantified in proteins as large as 80 kDa. The presented class of methods promises characterisation of side-chain behaviour at a level that has so far been reserved for the protein backbone.
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spelling pubmed-64652602019-04-17 Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy Pritchard, Ruth B. Hansen, D. Flemming Nat Commun Article Side chains cover protein surfaces and are fundamental to processes as diverse as substrate recognition, protein folding and enzyme catalysis. However, characterisation of side-chain motions has so far been restricted to small proteins and methyl-bearing side chains. Here we present a class of methods, based on (13)C-detected NMR spectroscopy, to more generally quantify motions and interactions of side chains in medium-to-large proteins. A single, uniformly isotopically labelled sample is sufficient to characterise the side chains of six different amino acid types. Side-chain conformational dynamics on the millisecond time-scale can be quantified by incorporating chemical exchange saturation transfer (CEST) into the presented methods, whilst long-range (13)C-(13)C scalar couplings reporting on nanosecond to millisecond motions can be quantified in proteins as large as 80 kDa. The presented class of methods promises characterisation of side-chain behaviour at a level that has so far been reserved for the protein backbone. Nature Publishing Group UK 2019-04-15 /pmc/articles/PMC6465260/ /pubmed/30988305 http://dx.doi.org/10.1038/s41467-019-09743-4 Text en © Crown 2019 Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.
spellingShingle Article
Pritchard, Ruth B.
Hansen, D. Flemming
Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy
title Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy
title_full Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy
title_fullStr Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy
title_full_unstemmed Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy
title_short Characterising side chains in large proteins by protonless (13)C-detected NMR spectroscopy
title_sort characterising side chains in large proteins by protonless (13)c-detected nmr spectroscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6465260/
https://www.ncbi.nlm.nih.gov/pubmed/30988305
http://dx.doi.org/10.1038/s41467-019-09743-4
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