Cargando…
smCounter2: an accurate low-frequency variant caller for targeted sequencing data with unique molecular identifiers
MOTIVATION: Low-frequency DNA mutations are often confounded with technical artifacts from sample preparation and sequencing. With unique molecular identifiers (UMIs), most of the sequencing errors can be corrected. However, errors before UMI tagging, such as DNA polymerase errors during end repair...
Autores principales: | Xu, Chang, Gu, Xiujing, Padmanabhan, Raghavendra, Wu, Zhong, Peng, Quan, DiCarlo, John, Wang, Yexun |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2019
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6477992/ https://www.ncbi.nlm.nih.gov/pubmed/30192920 http://dx.doi.org/10.1093/bioinformatics/bty790 |
Ejemplares similares
-
Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller
por: Xu, Chang, et al.
Publicado: (2017) -
MetaSV: an accurate and integrative structural-variant caller for next generation sequencing
por: Mohiyuddin, Marghoob, et al.
Publicado: (2015) -
UNDR ROVER - a fast and accurate variant caller for targeted DNA sequencing
por: Park, Daniel J., et al.
Publicado: (2016) -
Pisces: an accurate and versatile variant caller for somatic and germline next-generation sequencing data
por: Dunn, Tamsen, et al.
Publicado: (2019) -
Psi-Caller: A Lightweight Short Read-Based Variant Caller With High Speed and Accuracy
por: Liu, Yadong, et al.
Publicado: (2021)