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3D based on 2D: Calculating helix angles and stacking patterns using forgi 2.0, an RNA Python library centered on secondary structure elements.

We present forgi, a Python library to analyze the tertiary structure of RNA secondary structure elements. Our representation of an RNA molecule is centered on secondary structure elements (stems, bulges and loops). By fitting a cylinder to the helix axis, these elements are carried over into a coars...

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Detalles Bibliográficos
Autores principales: Thiel, Bernhard C., Beckmann, Irene K., Kerpedjiev, Peter, Hofacker, Ivo L.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: F1000 Research Limited 2019
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6480952/
https://www.ncbi.nlm.nih.gov/pubmed/31069053
http://dx.doi.org/10.12688/f1000research.18458.2