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“Mirror” Method to Estimate Mutagenic Activity of DNA Lesions

We propose an improved method for detecting mutations that arise in DNA due to misincorporations of deoxyadenosine-5′-monophosphate (dAMP) opposite 7,8-dihydro-8-oxoguanine (8-oxoG). The method is based on the synthesis of complementary chains (“mirror” products) using a template containing 8-oxoG....

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Autores principales: Gening, Leonid V., Shevchenko, Oleg V., Kazachenko, Konstantin Y., Tarantul, Vyacheslav Z.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2018
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481070/
https://www.ncbi.nlm.nih.gov/pubmed/31164573
http://dx.doi.org/10.3390/mps1030032
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author Gening, Leonid V.
Shevchenko, Oleg V.
Kazachenko, Konstantin Y.
Tarantul, Vyacheslav Z.
author_facet Gening, Leonid V.
Shevchenko, Oleg V.
Kazachenko, Konstantin Y.
Tarantul, Vyacheslav Z.
author_sort Gening, Leonid V.
collection PubMed
description We propose an improved method for detecting mutations that arise in DNA due to misincorporations of deoxyadenosine-5′-monophosphate (dAMP) opposite 7,8-dihydro-8-oxoguanine (8-oxoG). The method is based on the synthesis of complementary chains (“mirror” products) using a template containing 8-oxoG. The misincorporation of dAMP in the “mirror” product forms EcoRI sites. The restriction analysis of double-stranded DNAs obtained by PCR of “mirror” product allows quantification of the mutagenesis frequency. In addition, single-strand conformational polymorphism (SSCP) analysis of the single-stranded “mirror” products shows that different DNA polymerases only incorporate dA or dC opposite 8-oxoG. The proposed approach used in developing this technique can be applied in the study of other lesions as well, both single and clustered.
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spelling pubmed-64810702019-05-31 “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions Gening, Leonid V. Shevchenko, Oleg V. Kazachenko, Konstantin Y. Tarantul, Vyacheslav Z. Methods Protoc Technical Note We propose an improved method for detecting mutations that arise in DNA due to misincorporations of deoxyadenosine-5′-monophosphate (dAMP) opposite 7,8-dihydro-8-oxoguanine (8-oxoG). The method is based on the synthesis of complementary chains (“mirror” products) using a template containing 8-oxoG. The misincorporation of dAMP in the “mirror” product forms EcoRI sites. The restriction analysis of double-stranded DNAs obtained by PCR of “mirror” product allows quantification of the mutagenesis frequency. In addition, single-strand conformational polymorphism (SSCP) analysis of the single-stranded “mirror” products shows that different DNA polymerases only incorporate dA or dC opposite 8-oxoG. The proposed approach used in developing this technique can be applied in the study of other lesions as well, both single and clustered. MDPI 2018-08-27 /pmc/articles/PMC6481070/ /pubmed/31164573 http://dx.doi.org/10.3390/mps1030032 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/).
spellingShingle Technical Note
Gening, Leonid V.
Shevchenko, Oleg V.
Kazachenko, Konstantin Y.
Tarantul, Vyacheslav Z.
“Mirror” Method to Estimate Mutagenic Activity of DNA Lesions
title “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions
title_full “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions
title_fullStr “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions
title_full_unstemmed “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions
title_short “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions
title_sort “mirror” method to estimate mutagenic activity of dna lesions
topic Technical Note
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481070/
https://www.ncbi.nlm.nih.gov/pubmed/31164573
http://dx.doi.org/10.3390/mps1030032
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