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“Mirror” Method to Estimate Mutagenic Activity of DNA Lesions
We propose an improved method for detecting mutations that arise in DNA due to misincorporations of deoxyadenosine-5′-monophosphate (dAMP) opposite 7,8-dihydro-8-oxoguanine (8-oxoG). The method is based on the synthesis of complementary chains (“mirror” products) using a template containing 8-oxoG....
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
MDPI
2018
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481070/ https://www.ncbi.nlm.nih.gov/pubmed/31164573 http://dx.doi.org/10.3390/mps1030032 |
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author | Gening, Leonid V. Shevchenko, Oleg V. Kazachenko, Konstantin Y. Tarantul, Vyacheslav Z. |
author_facet | Gening, Leonid V. Shevchenko, Oleg V. Kazachenko, Konstantin Y. Tarantul, Vyacheslav Z. |
author_sort | Gening, Leonid V. |
collection | PubMed |
description | We propose an improved method for detecting mutations that arise in DNA due to misincorporations of deoxyadenosine-5′-monophosphate (dAMP) opposite 7,8-dihydro-8-oxoguanine (8-oxoG). The method is based on the synthesis of complementary chains (“mirror” products) using a template containing 8-oxoG. The misincorporation of dAMP in the “mirror” product forms EcoRI sites. The restriction analysis of double-stranded DNAs obtained by PCR of “mirror” product allows quantification of the mutagenesis frequency. In addition, single-strand conformational polymorphism (SSCP) analysis of the single-stranded “mirror” products shows that different DNA polymerases only incorporate dA or dC opposite 8-oxoG. The proposed approach used in developing this technique can be applied in the study of other lesions as well, both single and clustered. |
format | Online Article Text |
id | pubmed-6481070 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2018 |
publisher | MDPI |
record_format | MEDLINE/PubMed |
spelling | pubmed-64810702019-05-31 “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions Gening, Leonid V. Shevchenko, Oleg V. Kazachenko, Konstantin Y. Tarantul, Vyacheslav Z. Methods Protoc Technical Note We propose an improved method for detecting mutations that arise in DNA due to misincorporations of deoxyadenosine-5′-monophosphate (dAMP) opposite 7,8-dihydro-8-oxoguanine (8-oxoG). The method is based on the synthesis of complementary chains (“mirror” products) using a template containing 8-oxoG. The misincorporation of dAMP in the “mirror” product forms EcoRI sites. The restriction analysis of double-stranded DNAs obtained by PCR of “mirror” product allows quantification of the mutagenesis frequency. In addition, single-strand conformational polymorphism (SSCP) analysis of the single-stranded “mirror” products shows that different DNA polymerases only incorporate dA or dC opposite 8-oxoG. The proposed approach used in developing this technique can be applied in the study of other lesions as well, both single and clustered. MDPI 2018-08-27 /pmc/articles/PMC6481070/ /pubmed/31164573 http://dx.doi.org/10.3390/mps1030032 Text en © 2018 by the authors. Licensee MDPI, Basel, Switzerland. This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY) license (http://creativecommons.org/licenses/by/4.0/). |
spellingShingle | Technical Note Gening, Leonid V. Shevchenko, Oleg V. Kazachenko, Konstantin Y. Tarantul, Vyacheslav Z. “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions |
title | “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions |
title_full | “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions |
title_fullStr | “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions |
title_full_unstemmed | “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions |
title_short | “Mirror” Method to Estimate Mutagenic Activity of DNA Lesions |
title_sort | “mirror” method to estimate mutagenic activity of dna lesions |
topic | Technical Note |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6481070/ https://www.ncbi.nlm.nih.gov/pubmed/31164573 http://dx.doi.org/10.3390/mps1030032 |
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